Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 KRT8P47-201ENST00000604727 1398 ntBASIC13.91□□□□□ -0.18
CCDC140Q96MF4 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 NME9-203ENST00000383180 2133 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
CCDC140Q96MF4 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 CD320-202ENST00000537716 1119 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 AC087388.1-201ENST00000571370 1112 ntBASIC13.9□□□□□ -0.18
CCDC140Q96MF4 ANKRD20A8P-203ENST00000641373 517 ntBASIC13.9□□□□□ -0.18
CCDC140Q96MF4 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
CCDC140Q96MF4 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.19
CCDC140Q96MF4 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
CCDC140Q96MF4 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
CCDC140Q96MF4 AC005332.1-201ENST00000577698 1310 ntBASIC13.9□□□□□ -0.19
CCDC140Q96MF4 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 NDUFV2-AS1-203ENST00000608008 779 ntBASIC13.89□□□□□ -0.19
CCDC140Q96MF4 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CCDC140Q96MF4 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms