Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
RTF1Q92541 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
RTF1Q92541 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
RTF1Q92541 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTF1Q92541 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTF1Q92541 AC007967.3-201ENST00000434308 558 ntBASIC23.38■■□□□ 1.33
RTF1Q92541 AC106795.1-205ENST00000512851 1056 ntBASIC23.38■■□□□ 1.33
RTF1Q92541 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
RTF1Q92541 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
RTF1Q92541 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC23.38■■□□□ 1.33
RTF1Q92541 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTF1Q92541 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTF1Q92541 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
RTF1Q92541 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC23.38■■□□□ 1.33
RTF1Q92541 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTF1Q92541 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
RTF1Q92541 KRT8P47-201ENST00000604727 1398 ntBASIC23.38■■□□□ 1.33
RTF1Q92541 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
RTF1Q92541 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC23.38■■□□□ 1.33
RTF1Q92541 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC23.38■■□□□ 1.33
RTF1Q92541 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC23.37■■□□□ 1.33
RTF1Q92541 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC23.37■■□□□ 1.33
RTF1Q92541 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC23.37■■□□□ 1.33
RTF1Q92541 FAM220CP-201ENST00000395253 831 ntBASIC23.37■■□□□ 1.33
RTF1Q92541 MRPL3P1-201ENST00000400109 1033 ntBASIC23.37■■□□□ 1.33
RTF1Q92541 RBM17P3-201ENST00000417687 1192 ntBASIC23.37■■□□□ 1.33
RTF1Q92541 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC23.37■■□□□ 1.33
RTF1Q92541 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC23.37■■□□□ 1.33
RTF1Q92541 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC23.37■■□□□ 1.33
RTF1Q92541 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC23.37■■□□□ 1.33
RTF1Q92541 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC23.37■■□□□ 1.33
RTF1Q92541 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 AP001269.4-201ENST00000609611 512 ntBASIC23.37■■□□□ 1.33
RTF1Q92541 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC23.37■■□□□ 1.33
RTF1Q92541 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC23.37■■□□□ 1.33
RTF1Q92541 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC23.37■■□□□ 1.33
RTF1Q92541 AL355877.3-201ENST00000622820 899 ntBASIC23.37■■□□□ 1.33
RTF1Q92541 TP73-AS1-207ENST00000624167 988 ntBASIC23.37■■□□□ 1.33
RTF1Q92541 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC23.37■■□□□ 1.33
RTF1Q92541 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
RTF1Q92541 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC23.37■■□□□ 1.33
RTF1Q92541 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
RTF1Q92541 AC090164.3-201ENST00000610780 2143 ntBASIC23.36■■□□□ 1.33
RTF1Q92541 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
RTF1Q92541 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
RTF1Q92541 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC23.36■■□□□ 1.33
RTF1Q92541 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
RTF1Q92541 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
RTF1Q92541 AC096633.1-201ENST00000422446 749 ntBASIC23.36■■□□□ 1.33
RTF1Q92541 FAM197Y8-203ENST00000450145 560 ntBASIC23.36■■□□□ 1.33
RTF1Q92541 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC23.36■■□□□ 1.33
RTF1Q92541 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC23.36■■□□□ 1.33
RTF1Q92541 MTDHP3-201ENST00000594186 672 ntBASIC23.36■■□□□ 1.33
RTF1Q92541 AC064862.7-201ENST00000604520 867 ntBASIC23.36■■□□□ 1.33
RTF1Q92541 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
RTF1Q92541 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC23.36■■□□□ 1.33
RTF1Q92541 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
RTF1Q92541 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
RTF1Q92541 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
RTF1Q92541 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
RTF1Q92541 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
RTF1Q92541 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC23.36■■□□□ 1.33
RTF1Q92541 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC23.35■■□□□ 1.33
RTF1Q92541 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC23.35■■□□□ 1.33
RTF1Q92541 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC23.35■■□□□ 1.33
RTF1Q92541 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
RTF1Q92541 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 FLYWCH1P1-201ENST00000460917 1874 ntBASIC23.35■■□□□ 1.33
RTF1Q92541 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 ABCD1P5-201ENST00000445663 754 ntBASIC23.35■■□□□ 1.33
RTF1Q92541 RBSN-204ENST00000449050 903 ntTSL 2 BASIC23.35■■□□□ 1.33
RTF1Q92541 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
RTF1Q92541 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC23.35■■□□□ 1.33
RTF1Q92541 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
RTF1Q92541 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC23.35■■□□□ 1.33
RTF1Q92541 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
RTF1Q92541 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms