Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 PRORSD1P-202ENST00000563365 2154 ntBASIC17.4■□□□□ 0.38
FOXA1P55317 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.4■□□□□ 0.38
FOXA1P55317 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
FOXA1P55317 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
FOXA1P55317 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
FOXA1P55317 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
FOXA1P55317 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.4■□□□□ 0.38
FOXA1P55317 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.4■□□□□ 0.38
FOXA1P55317 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 ECEL1P3-201ENST00000427961 737 ntBASIC17.4■□□□□ 0.38
FOXA1P55317 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.4■□□□□ 0.38
FOXA1P55317 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.4■□□□□ 0.38
FOXA1P55317 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.4■□□□□ 0.38
FOXA1P55317 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.4■□□□□ 0.38
FOXA1P55317 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
FOXA1P55317 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.4■□□□□ 0.38
FOXA1P55317 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
FOXA1P55317 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
FOXA1P55317 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.4■□□□□ 0.38
FOXA1P55317 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
FOXA1P55317 AC022211.2-201ENST00000585075 2527 ntBASIC17.4■□□□□ 0.38
FOXA1P55317 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
FOXA1P55317 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
FOXA1P55317 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
FOXA1P55317 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.39■□□□□ 0.38
FOXA1P55317 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
FOXA1P55317 AC133963.1-201ENST00000504166 1679 ntBASIC17.39■□□□□ 0.37
FOXA1P55317 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
FOXA1P55317 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA1P55317 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA1P55317 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA1P55317 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA1P55317 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA1P55317 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA1P55317 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA1P55317 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA1P55317 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.39■□□□□ 0.37
FOXA1P55317 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
FOXA1P55317 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.39■□□□□ 0.37
FOXA1P55317 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.39■□□□□ 0.37
FOXA1P55317 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.39■□□□□ 0.37
FOXA1P55317 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
FOXA1P55317 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
FOXA1P55317 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA1P55317 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
FOXA1P55317 LINC00304-203ENST00000565008 1864 ntBASIC17.39■□□□□ 0.37
FOXA1P55317 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA1P55317 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA1P55317 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA1P55317 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
FOXA1P55317 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
FOXA1P55317 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
FOXA1P55317 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
FOXA1P55317 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
FOXA1P55317 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA1P55317 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.38■□□□□ 0.37
FOXA1P55317 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA1P55317 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
FOXA1P55317 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.38■□□□□ 0.37
FOXA1P55317 CROCCP2-202ENST00000412962 2773 ntBASIC17.38■□□□□ 0.37
FOXA1P55317 AP001094.4-201ENST00000579008 2176 ntBASIC17.38■□□□□ 0.37
FOXA1P55317 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA1P55317 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.38■□□□□ 0.37
FOXA1P55317 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.38■□□□□ 0.37
FOXA1P55317 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA1P55317 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
FOXA1P55317 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.38■□□□□ 0.37
FOXA1P55317 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
FOXA1P55317 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.38■□□□□ 0.37
FOXA1P55317 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.38■□□□□ 0.37
FOXA1P55317 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.38■□□□□ 0.37
FOXA1P55317 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.38■□□□□ 0.37
FOXA1P55317 AL512604.3-201ENST00000569583 964 ntBASIC17.38■□□□□ 0.37
FOXA1P55317 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
FOXA1P55317 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
FOXA1P55317 AC138932.1-201ENST00000534164 6830 ntBASIC17.38■□□□□ 0.37
FOXA1P55317 AL023806.1-201ENST00000603994 1649 ntBASIC17.38■□□□□ 0.37
FOXA1P55317 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
FOXA1P55317 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.38■□□□□ 0.37
FOXA1P55317 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
FOXA1P55317 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.38■□□□□ 0.37
FOXA1P55317 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
FOXA1P55317 LINC01568-207ENST00000641790 1380 ntBASIC17.38■□□□□ 0.37
FOXA1P55317 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
FOXA1P55317 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms