Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
LDB3O75112 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.92■□□□□ 0.3
LDB3O75112 KRT18P65-201ENST00000439811 1286 ntBASIC16.92■□□□□ 0.3
LDB3O75112 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.92■□□□□ 0.3
LDB3O75112 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.92■□□□□ 0.3
LDB3O75112 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.92■□□□□ 0.3
LDB3O75112 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.92■□□□□ 0.3
LDB3O75112 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 IGHV3-41-201ENST00000613121 348 ntBASIC16.92■□□□□ 0.3
LDB3O75112 AC009154.2-201ENST00000621177 724 ntBASIC16.92■□□□□ 0.3
LDB3O75112 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.92■□□□□ 0.3
LDB3O75112 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
LDB3O75112 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
LDB3O75112 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.92■□□□□ 0.3
LDB3O75112 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
LDB3O75112 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.92■□□□□ 0.3
LDB3O75112 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
LDB3O75112 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.91■□□□□ 0.3
LDB3O75112 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.91■□□□□ 0.3
LDB3O75112 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.91■□□□□ 0.3
LDB3O75112 AC100803.2-201ENST00000562459 1963 ntBASIC16.91■□□□□ 0.3
LDB3O75112 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.91■□□□□ 0.3
LDB3O75112 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC16.91■□□□□ 0.3
LDB3O75112 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.91■□□□□ 0.3
LDB3O75112 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.91■□□□□ 0.3
LDB3O75112 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
LDB3O75112 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.91■□□□□ 0.3
LDB3O75112 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.91■□□□□ 0.3
LDB3O75112 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.91■□□□□ 0.3
LDB3O75112 GUSBP12-201ENST00000513727 720 ntBASIC16.91■□□□□ 0.3
LDB3O75112 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 DUTP2-201ENST00000519164 463 ntBASIC16.91■□□□□ 0.3
LDB3O75112 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.91■□□□□ 0.3
LDB3O75112 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LDB3O75112 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 AC069148.1-201ENST00000608741 768 ntBASIC16.91■□□□□ 0.3
LDB3O75112 AC093458.2-201ENST00000623150 629 ntBASIC16.91■□□□□ 0.3
LDB3O75112 AC124864.1-201ENST00000623408 392 ntBASIC16.91■□□□□ 0.3
LDB3O75112 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LDB3O75112 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.91■□□□□ 0.3
LDB3O75112 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
LDB3O75112 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
LDB3O75112 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
LDB3O75112 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
LDB3O75112 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
LDB3O75112 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
LDB3O75112 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.9■□□□□ 0.3
LDB3O75112 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
LDB3O75112 AL133373.2-201ENST00000623187 2828 ntBASIC16.9■□□□□ 0.3
LDB3O75112 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.9■□□□□ 0.3
LDB3O75112 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.9■□□□□ 0.3
LDB3O75112 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.9■□□□□ 0.3
LDB3O75112 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 CHCHD2P8-201ENST00000429873 447 ntBASIC16.9■□□□□ 0.3
LDB3O75112 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
LDB3O75112 TSSC2-201ENST00000450217 709 ntBASIC16.9■□□□□ 0.3
LDB3O75112 AC068472.1-201ENST00000474589 881 ntBASIC16.9■□□□□ 0.3
LDB3O75112 AL592071.1-201ENST00000611956 408 ntBASIC16.9■□□□□ 0.3
LDB3O75112 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.9■□□□□ 0.3
LDB3O75112 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms