Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC188H7C350 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCDC188H7C350 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC188H7C350 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC188H7C350 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC188H7C350 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC188H7C350 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC188H7C350 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CCDC188H7C350 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC188H7C350 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC188H7C350 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 AC112497.1-201ENST00000624824 639 ntBASIC18.7■□□□□ 0.58
CCDC188H7C350 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC188H7C350 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC188H7C350 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCDC188H7C350 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC188H7C350 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC188H7C350 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
CCDC188H7C350 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC188H7C350 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC188H7C350 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC188H7C350 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC188H7C350 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC188H7C350 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC188H7C350 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC188H7C350 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC188H7C350 CRYGFP-201ENST00000418459 633 ntBASIC18.69■□□□□ 0.58
CCDC188H7C350 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC188H7C350 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC188H7C350 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC18.69■□□□□ 0.58
CCDC188H7C350 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC188H7C350 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC188H7C350 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC188H7C350 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC188H7C350 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CCDC188H7C350 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CCDC188H7C350 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC188H7C350 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC188H7C350 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC188H7C350 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.68■□□□□ 0.58
CCDC188H7C350 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC188H7C350 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.68■□□□□ 0.58
CCDC188H7C350 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
CCDC188H7C350 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC188H7C350 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC188H7C350 GRAMD4P8-201ENST00000605465 1115 ntBASIC18.68■□□□□ 0.58
CCDC188H7C350 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC188H7C350 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CCDC188H7C350 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC188H7C350 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC188H7C350 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
CCDC188H7C350 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC188H7C350 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
CCDC188H7C350 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC188H7C350 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC188H7C350 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC188H7C350 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC188H7C350 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC188H7C350 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC188H7C350 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC188H7C350 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC188H7C350 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
CCDC188H7C350 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC188H7C350 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC188H7C350 AL118508.1-201ENST00000613502 2345 ntBASIC18.67■□□□□ 0.58
CCDC188H7C350 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CCDC188H7C350 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC188H7C350 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CCDC188H7C350 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC188H7C350 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
CCDC188H7C350 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC188H7C350 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms