Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.73■□□□□ 0.11
NKX3-1Q99801 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 KRT17P2-201ENST00000300992 1314 ntBASIC15.73■□□□□ 0.11
NKX3-1Q99801 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC15.73■□□□□ 0.11
NKX3-1Q99801 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
NKX3-1Q99801 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC15.73■□□□□ 0.11
NKX3-1Q99801 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
NKX3-1Q99801 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC15.73■□□□□ 0.11
NKX3-1Q99801 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 CRYGFP-201ENST00000418459 633 ntBASIC15.73■□□□□ 0.11
NKX3-1Q99801 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC15.73■□□□□ 0.11
NKX3-1Q99801 NAT14-202ENST00000587400 416 ntTSL 5 BASIC15.73■□□□□ 0.11
NKX3-1Q99801 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 AC006116.8-202ENST00000587620 1550 ntBASIC15.73■□□□□ 0.11
NKX3-1Q99801 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC15.73■□□□□ 0.11
NKX3-1Q99801 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
NKX3-1Q99801 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC15.73■□□□□ 0.11
NKX3-1Q99801 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
NKX3-1Q99801 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
NKX3-1Q99801 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
NKX3-1Q99801 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
NKX3-1Q99801 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC15.72■□□□□ 0.11
NKX3-1Q99801 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
NKX3-1Q99801 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.72■□□□□ 0.11
NKX3-1Q99801 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
NKX3-1Q99801 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 SLC25A6P5-201ENST00000435663 894 ntBASIC15.72■□□□□ 0.11
NKX3-1Q99801 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC15.72■□□□□ 0.11
NKX3-1Q99801 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC15.72■□□□□ 0.11
NKX3-1Q99801 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 DHDH-203ENST00000522614 776 ntTSL 5 BASIC15.72■□□□□ 0.11
NKX3-1Q99801 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC15.72■□□□□ 0.11
NKX3-1Q99801 MIR4785-201ENST00000585005 73 ntBASIC15.72■□□□□ 0.11
NKX3-1Q99801 AC113410.3-201ENST00000623366 203 ntBASIC15.72■□□□□ 0.11
NKX3-1Q99801 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
NKX3-1Q99801 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 AL163051.1-201ENST00000569214 1512 ntBASIC15.72■□□□□ 0.11
NKX3-1Q99801 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.72■□□□□ 0.11
NKX3-1Q99801 AC084018.2-201ENST00000613093 2607 ntBASIC15.72■□□□□ 0.11
NKX3-1Q99801 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
NKX3-1Q99801 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
NKX3-1Q99801 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.72■□□□□ 0.11
NKX3-1Q99801 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
NKX3-1Q99801 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
NKX3-1Q99801 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.71■□□□□ 0.11
NKX3-1Q99801 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
NKX3-1Q99801 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
NKX3-1Q99801 AP000593.1-201ENST00000393668 712 ntBASIC15.71■□□□□ 0.11
NKX3-1Q99801 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC15.71■□□□□ 0.11
NKX3-1Q99801 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 PENK-204ENST00000518770 863 ntTSL 2 BASIC15.71■□□□□ 0.11
NKX3-1Q99801 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC15.71■□□□□ 0.11
NKX3-1Q99801 MIR3180-5-201ENST00000583743 153 ntBASIC15.71■□□□□ 0.11
NKX3-1Q99801 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
NKX3-1Q99801 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC15.71■□□□□ 0.11
NKX3-1Q99801 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms