Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC29.58■■■□□ 2.33
IFT140Q96RY7 AC138649.4-201ENST00000612222 287 ntBASIC29.58■■■□□ 2.33
IFT140Q96RY7 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
IFT140Q96RY7 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
IFT140Q96RY7 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC29.58■■■□□ 2.33
IFT140Q96RY7 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC29.58■■■□□ 2.33
IFT140Q96RY7 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
IFT140Q96RY7 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC29.58■■■□□ 2.33
IFT140Q96RY7 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
IFT140Q96RY7 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC29.57■■■□□ 2.32
IFT140Q96RY7 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
IFT140Q96RY7 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
IFT140Q96RY7 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
IFT140Q96RY7 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
IFT140Q96RY7 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC29.57■■■□□ 2.32
IFT140Q96RY7 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC29.57■■■□□ 2.32
IFT140Q96RY7 CECR7-204ENST00000609932 568 ntTSL 2 BASIC29.57■■■□□ 2.32
IFT140Q96RY7 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC29.57■■■□□ 2.32
IFT140Q96RY7 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC29.57■■■□□ 2.32
IFT140Q96RY7 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC29.57■■■□□ 2.32
IFT140Q96RY7 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC29.57■■■□□ 2.32
IFT140Q96RY7 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
IFT140Q96RY7 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
IFT140Q96RY7 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC29.57■■■□□ 2.32
IFT140Q96RY7 SIRPAP1-201ENST00000448467 1770 ntBASIC29.57■■■□□ 2.32
IFT140Q96RY7 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC29.57■■■□□ 2.32
IFT140Q96RY7 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC29.57■■■□□ 2.32
IFT140Q96RY7 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
IFT140Q96RY7 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC29.57■■■□□ 2.32
IFT140Q96RY7 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
IFT140Q96RY7 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
IFT140Q96RY7 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
IFT140Q96RY7 GRAP-202ENST00000395635 834 ntTSL 2 BASIC29.56■■■□□ 2.32
IFT140Q96RY7 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC29.56■■■□□ 2.32
IFT140Q96RY7 CXCL1P1-201ENST00000502804 216 ntBASIC29.56■■■□□ 2.32
IFT140Q96RY7 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
IFT140Q96RY7 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC29.56■■■□□ 2.32
IFT140Q96RY7 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC29.56■■■□□ 2.32
IFT140Q96RY7 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC29.56■■■□□ 2.32
IFT140Q96RY7 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC29.56■■■□□ 2.32
IFT140Q96RY7 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC29.56■■■□□ 2.32
IFT140Q96RY7 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC29.56■■■□□ 2.32
IFT140Q96RY7 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC29.56■■■□□ 2.32
IFT140Q96RY7 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC29.55■■■□□ 2.32
IFT140Q96RY7 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC29.55■■■□□ 2.32
IFT140Q96RY7 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC29.55■■■□□ 2.32
IFT140Q96RY7 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
IFT140Q96RY7 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC29.55■■■□□ 2.32
IFT140Q96RY7 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC29.55■■■□□ 2.32
IFT140Q96RY7 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
IFT140Q96RY7 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC29.55■■■□□ 2.32
IFT140Q96RY7 LINC01006-201ENST00000333319 2292 ntBASIC29.55■■■□□ 2.32
IFT140Q96RY7 AL355306.1-201ENST00000415580 579 ntBASIC29.55■■■□□ 2.32
IFT140Q96RY7 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC29.55■■■□□ 2.32
IFT140Q96RY7 BASP1P1-201ENST00000430708 665 ntBASIC29.55■■■□□ 2.32
IFT140Q96RY7 TSPY16P-201ENST00000449843 468 ntBASIC29.55■■■□□ 2.32
IFT140Q96RY7 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
IFT140Q96RY7 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC29.55■■■□□ 2.32
IFT140Q96RY7 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
IFT140Q96RY7 AC019129.2-201ENST00000609837 1235 ntBASIC29.55■■■□□ 2.32
IFT140Q96RY7 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC29.54■■■□□ 2.32
IFT140Q96RY7 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
IFT140Q96RY7 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
IFT140Q96RY7 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC29.54■■■□□ 2.32
IFT140Q96RY7 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC29.54■■■□□ 2.32
IFT140Q96RY7 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC29.54■■■□□ 2.32
IFT140Q96RY7 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
IFT140Q96RY7 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC29.54■■■□□ 2.32
IFT140Q96RY7 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC29.54■■■□□ 2.32
IFT140Q96RY7 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC29.54■■■□□ 2.32
IFT140Q96RY7 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
IFT140Q96RY7 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC29.53■■■□□ 2.32
IFT140Q96RY7 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
IFT140Q96RY7 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
IFT140Q96RY7 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC29.53■■■□□ 2.32
IFT140Q96RY7 AC112191.1-201ENST00000523689 701 ntBASIC29.53■■■□□ 2.32
IFT140Q96RY7 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC29.53■■■□□ 2.32
IFT140Q96RY7 AL512356.2-201ENST00000546955 174 ntBASIC29.53■■■□□ 2.32
IFT140Q96RY7 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC29.53■■■□□ 2.32
IFT140Q96RY7 AC099522.2-201ENST00000607001 744 ntBASIC29.53■■■□□ 2.32
IFT140Q96RY7 AC008761.3-201ENST00000624803 892 ntBASIC29.53■■■□□ 2.32
IFT140Q96RY7 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC29.53■■■□□ 2.32
IFT140Q96RY7 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
IFT140Q96RY7 AL499627.1-201ENST00000569373 2188 ntBASIC29.53■■■□□ 2.32
IFT140Q96RY7 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC29.52■■■□□ 2.32
IFT140Q96RY7 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
IFT140Q96RY7 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
IFT140Q96RY7 HNRNPFP1-201ENST00000391730 1133 ntBASIC29.52■■■□□ 2.32
IFT140Q96RY7 NABP1-203ENST00000409510 843 ntTSL 5 BASIC29.52■■■□□ 2.32
IFT140Q96RY7 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC29.52■■■□□ 2.32
IFT140Q96RY7 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC29.52■■■□□ 2.32
IFT140Q96RY7 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC29.52■■■□□ 2.32
IFT140Q96RY7 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC29.52■■■□□ 2.32
IFT140Q96RY7 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC29.52■■■□□ 2.32
IFT140Q96RY7 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
IFT140Q96RY7 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC29.52■■■□□ 2.32
IFT140Q96RY7 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
IFT140Q96RY7 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC29.52■■■□□ 2.32
IFT140Q96RY7 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
IFT140Q96RY7 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC29.52■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms