Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 AC138932.1-201ENST00000534164 6830 ntBASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.26■□□□□ 0.99
SMC1BQ8NDV3 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 KRT18P65-201ENST00000439811 1286 ntBASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 AL512408.1-201ENST00000569378 2000 ntBASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 AC025580.3-201ENST00000617932 1424 ntBASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 AC008761.3-201ENST00000624803 892 ntBASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 AC009102.3-201ENST00000623118 1491 ntBASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SMC1BQ8NDV3 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 RHOQP3-201ENST00000437982 621 ntBASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 LINC02560-201ENST00000596379 459 ntBASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 LINC00602-201ENST00000629776 2065 ntBASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SMC1BQ8NDV3 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 NABP1-203ENST00000409510 843 ntTSL 5 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.23■□□□□ 0.99
SMC1BQ8NDV3 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 AC007967.3-201ENST00000434308 558 ntBASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 CNN2P2-201ENST00000443536 909 ntBASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 CNN2P3-201ENST00000450201 906 ntBASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 AC112698.1-201ENST00000510299 916 ntBASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC21.22■□□□□ 0.99
SMC1BQ8NDV3 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms