Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 AC096633.1-201ENST00000422446 749 ntBASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 LAGE3P1-201ENST00000425356 484 ntBASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 AC009947.1-201ENST00000444350 727 ntBASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 MSRA-206ENST00000521209 814 ntTSL 3 BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 SIRPAP1-201ENST00000448467 1770 ntBASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
USHBP1Q8N6Y0 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 HS6ST1P1-201ENST00000481504 1234 ntBASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 AD001527.2-201ENST00000622994 785 ntBASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
USHBP1Q8N6Y0 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 YBX2P1-201ENST00000394192 760 ntBASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 RPSAP43-201ENST00000402237 625 ntBASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 FIS1-203ENST00000442303 631 ntTSL 3 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
USHBP1Q8N6Y0 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 IMP4-203ENST00000409935 958 ntTSL 5 BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 AC023274.1-201ENST00000418278 595 ntBASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 UPF3AP3-201ENST00000420996 769 ntBASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 GPX1P2-201ENST00000429271 606 ntBASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 AL591424.1-201ENST00000442569 1213 ntBASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 AL022326.1-202ENST00000641533 845 ntBASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
USHBP1Q8N6Y0 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms