Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 HIST2H3DP1-201ENST00000401004 416 ntBASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 RPL13AP23-201ENST00000480739 586 ntBASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 AC011467.2-201ENST00000598425 242 ntBASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 AC132938.6-201ENST00000623828 1655 ntBASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.01■□□□□ 0.47
HDDC3Q8N4P3 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18■□□□□ 0.47
HDDC3Q8N4P3 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18■□□□□ 0.47
HDDC3Q8N4P3 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
HDDC3Q8N4P3 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
HDDC3Q8N4P3 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
HDDC3Q8N4P3 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HDDC3Q8N4P3 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HDDC3Q8N4P3 RPS2P28-201ENST00000314255 741 ntBASIC18■□□□□ 0.47
HDDC3Q8N4P3 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC18■□□□□ 0.47
HDDC3Q8N4P3 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 AC139887.3-201ENST00000568585 713 ntBASIC18■□□□□ 0.47
HDDC3Q8N4P3 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
HDDC3Q8N4P3 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 AC148477.8-201ENST00000624298 468 ntBASIC18■□□□□ 0.47
HDDC3Q8N4P3 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
HDDC3Q8N4P3 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 AC073592.3-201ENST00000625118 1834 ntBASIC18■□□□□ 0.47
HDDC3Q8N4P3 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HDDC3Q8N4P3 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
HDDC3Q8N4P3 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 MTDHP3-201ENST00000594186 672 ntBASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 AL355877.3-201ENST00000622820 899 ntBASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 AC243591.1-201ENST00000452967 1364 ntBASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
HDDC3Q8N4P3 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms