Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 AC138028.4-201ENST00000564984 1845 ntBASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 AL031133.1-201ENST00000406807 723 ntBASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
SYNE3Q6ZMZ3 NOC2LP2-201ENST00000407594 1944 ntBASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 FLJ13224-201ENST00000313737 1514 ntBASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 RMI2-205ENST00000576027 818 ntTSL 2 BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 AL121956.5-201ENST00000625261 221 ntBASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SYNE3Q6ZMZ3 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 IGHGP-201ENST00000390555 1178 ntBASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 AL645929.1-201ENST00000420084 975 ntBASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 AL136038.3-201ENST00000561909 1096 ntBASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 GPR32P1-201ENST00000601788 811 ntBASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 AC004263.2-201ENST00000617183 678 ntBASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.18■□□□□ 0.98
SYNE3Q6ZMZ3 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 MIR1224-201ENST00000408193 85 ntBASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 SPDYE13P-201ENST00000445314 798 ntBASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 CD320-202ENST00000537716 1119 ntTSL 2 BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 AC005332.3-201ENST00000589904 676 ntBASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 AC022898.2-201ENST00000616822 1312 ntBASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SYNE3Q6ZMZ3 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms