Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 AC004817.3-201ENST00000602957 2129 ntBASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 GPR89P-201ENST00000407924 1495 ntBASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CCDC88AQ3V6T2 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 PMPCAP1-201ENST00000508114 1576 ntBASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 AL139400.1-201ENST00000366220 510 ntBASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 AJ011932.1-201ENST00000621707 465 ntBASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 NCF1C-201ENST00000438382 1427 ntBASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.87■■□□□ 1.09
CCDC88AQ3V6T2 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 AC010460.3-201ENST00000511359 1579 ntBASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 SOD2-201ENST00000337404 991 ntTSL 2 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC21.86■■□□□ 1.09
CCDC88AQ3V6T2 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 AC126763.1-201ENST00000552015 2118 ntBASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 AC008687.5-201ENST00000593746 558 ntBASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC21.85■■□□□ 1.09
CCDC88AQ3V6T2 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 AC148477.5-201ENST00000625164 1645 ntBASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 AL031432.2-201ENST00000566714 459 ntBASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 AL928711.1-201ENST00000570165 459 ntBASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 AC138761.1-201ENST00000584393 385 ntBASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
CCDC88AQ3V6T2 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms