Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGA1P17096 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
HMGA1P17096 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGA1P17096 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
HMGA1P17096 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGA1P17096 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGA1P17096 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
HMGA1P17096 COX5BP2-201ENST00000392354 334 ntBASIC18.61■□□□□ 0.57
HMGA1P17096 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGA1P17096 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.61■□□□□ 0.57
HMGA1P17096 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.61■□□□□ 0.57
HMGA1P17096 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGA1P17096 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGA1P17096 AC139887.3-201ENST00000568585 713 ntBASIC18.61■□□□□ 0.57
HMGA1P17096 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.61■□□□□ 0.57
HMGA1P17096 AC025062.2-201ENST00000605477 670 ntBASIC18.61■□□□□ 0.57
HMGA1P17096 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.61■□□□□ 0.57
HMGA1P17096 AD001527.2-201ENST00000622994 785 ntBASIC18.61■□□□□ 0.57
HMGA1P17096 AL139288.1-201ENST00000623748 933 ntBASIC18.61■□□□□ 0.57
HMGA1P17096 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGA1P17096 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGA1P17096 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGA1P17096 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HMGA1P17096 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGA1P17096 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HMGA1P17096 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
HMGA1P17096 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
HMGA1P17096 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGA1P17096 AC087289.5-201ENST00000586076 3175 ntBASIC18.6■□□□□ 0.57
HMGA1P17096 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HMGA1P17096 RPS2P1-201ENST00000434010 821 ntBASIC18.6■□□□□ 0.57
HMGA1P17096 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HMGA1P17096 AC093909.1-201ENST00000504731 1122 ntBASIC18.6■□□□□ 0.57
HMGA1P17096 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.6■□□□□ 0.57
HMGA1P17096 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGA1P17096 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.6■□□□□ 0.57
HMGA1P17096 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
HMGA1P17096 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
HMGA1P17096 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGA1P17096 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.6■□□□□ 0.57
HMGA1P17096 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
HMGA1P17096 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGA1P17096 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGA1P17096 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
HMGA1P17096 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGA1P17096 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGA1P17096 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGA1P17096 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGA1P17096 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.59■□□□□ 0.57
HMGA1P17096 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGA1P17096 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGA1P17096 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
HMGA1P17096 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.59■□□□□ 0.57
HMGA1P17096 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGA1P17096 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGA1P17096 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
HMGA1P17096 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGA1P17096 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGA1P17096 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGA1P17096 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
HMGA1P17096 AC116407.3-201ENST00000623905 1129 ntBASIC18.59■□□□□ 0.57
HMGA1P17096 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGA1P17096 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGA1P17096 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGA1P17096 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGA1P17096 AC100803.2-201ENST00000562459 1963 ntBASIC18.59■□□□□ 0.57
HMGA1P17096 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
HMGA1P17096 AC004408.2-201ENST00000623613 2777 ntBASIC18.59■□□□□ 0.57
HMGA1P17096 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGA1P17096 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGA1P17096 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGA1P17096 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGA1P17096 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGA1P17096 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.57
HMGA1P17096 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGA1P17096 MIR574-201ENST00000385209 96 ntBASIC18.58■□□□□ 0.56
HMGA1P17096 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.58■□□□□ 0.56
HMGA1P17096 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.58■□□□□ 0.56
HMGA1P17096 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.58■□□□□ 0.56
HMGA1P17096 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGA1P17096 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
HMGA1P17096 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
HMGA1P17096 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGA1P17096 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms