Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
COL3A1P02461 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC23.7■■□□□ 1.38
COL3A1P02461 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
COL3A1P02461 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
COL3A1P02461 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC23.69■■□□□ 1.38
COL3A1P02461 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
COL3A1P02461 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL3A1P02461 FUOM-202ENST00000368551 628 ntTSL 3 BASIC23.69■■□□□ 1.38
COL3A1P02461 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC23.69■■□□□ 1.38
COL3A1P02461 PPIE-208ENST00000470213 927 ntTSL 3 BASIC23.69■■□□□ 1.38
COL3A1P02461 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC23.69■■□□□ 1.38
COL3A1P02461 WDR88-203ENST00000592765 651 ntTSL 5 BASIC23.69■■□□□ 1.38
COL3A1P02461 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC23.69■■□□□ 1.38
COL3A1P02461 AC148477.8-201ENST00000624298 468 ntBASIC23.69■■□□□ 1.38
COL3A1P02461 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC23.69■■□□□ 1.38
COL3A1P02461 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
COL3A1P02461 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
COL3A1P02461 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL3A1P02461 HARS-201ENST00000307633 1780 ntTSL 2 BASIC23.69■■□□□ 1.38
COL3A1P02461 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL3A1P02461 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC23.69■■□□□ 1.38
COL3A1P02461 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
COL3A1P02461 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC23.69■■□□□ 1.38
COL3A1P02461 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
COL3A1P02461 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC23.69■■□□□ 1.38
COL3A1P02461 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL3A1P02461 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL3A1P02461 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC23.68■■□□□ 1.38
COL3A1P02461 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
COL3A1P02461 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC23.68■■□□□ 1.38
COL3A1P02461 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC23.68■■□□□ 1.38
COL3A1P02461 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC23.68■■□□□ 1.38
COL3A1P02461 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC23.68■■□□□ 1.38
COL3A1P02461 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL3A1P02461 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL3A1P02461 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL3A1P02461 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL3A1P02461 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
COL3A1P02461 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
COL3A1P02461 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC23.68■■□□□ 1.38
COL3A1P02461 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC23.68■■□□□ 1.38
COL3A1P02461 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL3A1P02461 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL3A1P02461 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL3A1P02461 COX5BP2-201ENST00000392354 334 ntBASIC23.68■■□□□ 1.38
COL3A1P02461 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC23.68■■□□□ 1.38
COL3A1P02461 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
COL3A1P02461 PON3-205ENST00000451904 1053 ntTSL 3 BASIC23.68■■□□□ 1.38
COL3A1P02461 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
COL3A1P02461 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC23.68■■□□□ 1.38
COL3A1P02461 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL3A1P02461 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
COL3A1P02461 CALM3-211ENST00000598871 561 ntTSL 4 BASIC23.68■■□□□ 1.38
COL3A1P02461 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL3A1P02461 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
COL3A1P02461 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL3A1P02461 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
COL3A1P02461 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC23.67■■□□□ 1.38
COL3A1P02461 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL3A1P02461 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC23.67■■□□□ 1.38
COL3A1P02461 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC23.67■■□□□ 1.38
COL3A1P02461 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL3A1P02461 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC23.67■■□□□ 1.38
COL3A1P02461 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC23.67■■□□□ 1.38
COL3A1P02461 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL3A1P02461 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL3A1P02461 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
COL3A1P02461 AC005104.2-201ENST00000427818 678 ntBASIC23.67■■□□□ 1.38
COL3A1P02461 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC23.67■■□□□ 1.38
COL3A1P02461 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC23.67■■□□□ 1.38
COL3A1P02461 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
COL3A1P02461 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC23.67■■□□□ 1.38
COL3A1P02461 AC006116.8-202ENST00000587620 1550 ntBASIC23.67■■□□□ 1.38
COL3A1P02461 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL3A1P02461 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL3A1P02461 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL3A1P02461 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL3A1P02461 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL3A1P02461 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC23.66■■□□□ 1.38
COL3A1P02461 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL3A1P02461 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL3A1P02461 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL3A1P02461 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
COL3A1P02461 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC23.66■■□□□ 1.38
COL3A1P02461 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
COL3A1P02461 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC23.66■■□□□ 1.38
COL3A1P02461 KLK8-205ENST00000593490 267 ntTSL 3 BASIC23.66■■□□□ 1.38
COL3A1P02461 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
COL3A1P02461 AL139288.1-201ENST00000623748 933 ntBASIC23.66■■□□□ 1.38
COL3A1P02461 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC23.66■■□□□ 1.38
COL3A1P02461 AC148477.5-201ENST00000625164 1645 ntBASIC23.66■■□□□ 1.38
COL3A1P02461 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL3A1P02461 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL3A1P02461 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL3A1P02461 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL3A1P02461 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
COL3A1P02461 TBC1D3P5-201ENST00000579401 1545 ntBASIC23.65■■□□□ 1.38
COL3A1P02461 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
COL3A1P02461 AL049757.1-201ENST00000616842 1596 ntBASIC23.65■■□□□ 1.38
COL3A1P02461 REXO1L11P-201ENST00000620964 1927 ntBASIC23.65■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms