Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 KRT18P29-201ENST00000397031 1267 ntBASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 AL355355.2-201ENST00000442321 338 ntBASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 FAM201B-201ENST00000458407 597 ntBASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 DUTP2-201ENST00000519164 463 ntBASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 AL353719.1-201ENST00000566847 864 ntBASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 AC022211.2-201ENST00000585075 2527 ntBASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 TSPY17P-201ENST00000450329 467 ntBASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 MIR3180-4-201ENST00000582223 153 ntBASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 AL049637.2-201ENST00000641778 930 ntBASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 LINC00602-201ENST00000629776 2065 ntBASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TRIM49D1C9J1S8 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 AC133963.1-201ENST00000504166 1679 ntBASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 AC012618.2-201ENST00000428058 849 ntBASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 SLC25A1P2-201ENST00000430693 912 ntBASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 AC142381.4-202ENST00000563973 229 ntBASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 AP001412.1-201ENST00000608405 714 ntBASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
TRIM49D1C9J1S8 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
TRIM49D1C9J1S8 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms