Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
VPS13AQ96RL7 GABARAPL3-202ENST00000624044 1851 ntBASIC17.72■□□□□ 0.43
VPS13AQ96RL7 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 FEM1AP3-201ENST00000403722 1741 ntBASIC17.71■□□□□ 0.43
VPS13AQ96RL7 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.71■□□□□ 0.43
VPS13AQ96RL7 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS13AQ96RL7 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.71■□□□□ 0.42
VPS13AQ96RL7 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.71■□□□□ 0.42
VPS13AQ96RL7 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC17.71■□□□□ 0.42
VPS13AQ96RL7 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.42
VPS13AQ96RL7 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.71■□□□□ 0.42
VPS13AQ96RL7 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.71■□□□□ 0.42
VPS13AQ96RL7 DUX4L27-201ENST00000554796 1261 ntBASIC17.71■□□□□ 0.42
VPS13AQ96RL7 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
VPS13AQ96RL7 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 AC245100.3-201ENST00000441281 285 ntBASIC17.7■□□□□ 0.42
VPS13AQ96RL7 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 INGX-202ENST00000489074 768 ntBASIC17.7■□□□□ 0.42
VPS13AQ96RL7 AC025048.6-201ENST00000634326 1161 ntBASIC17.7■□□□□ 0.42
VPS13AQ96RL7 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 AC093484.2-201ENST00000580996 2166 ntBASIC17.7■□□□□ 0.42
VPS13AQ96RL7 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS13AQ96RL7 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 AC022494.1-201ENST00000466044 728 ntBASIC17.69■□□□□ 0.42
VPS13AQ96RL7 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 AC010654.1-201ENST00000615722 808 ntBASIC17.69■□□□□ 0.42
VPS13AQ96RL7 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 AC112698.1-201ENST00000510299 916 ntBASIC17.69■□□□□ 0.42
VPS13AQ96RL7 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS13AQ96RL7 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms