Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC42Q96M95 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC42Q96M95 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC42Q96M95 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC42Q96M95 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC42Q96M95 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.47■□□□□ 0.71
CCDC42Q96M95 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC42Q96M95 AC104390.1-201ENST00000555663 520 ntBASIC19.47■□□□□ 0.71
CCDC42Q96M95 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.47■□□□□ 0.71
CCDC42Q96M95 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC42Q96M95 AC233702.5-201ENST00000584107 538 ntBASIC19.47■□□□□ 0.71
CCDC42Q96M95 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC42Q96M95 AC112497.1-201ENST00000624824 639 ntBASIC19.47■□□□□ 0.71
CCDC42Q96M95 BANP-227ENST00000626016 2144 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC42Q96M95 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC42Q96M95 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CCDC42Q96M95 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC42Q96M95 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.47■□□□□ 0.71
CCDC42Q96M95 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC42Q96M95 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC42Q96M95 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC42Q96M95 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC42Q96M95 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC42Q96M95 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC42Q96M95 PCDHA12-202ENST00000613593 2588 ntBASIC19.46■□□□□ 0.71
CCDC42Q96M95 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 AL355312.1-201ENST00000407115 2176 ntBASIC19.46■□□□□ 0.71
CCDC42Q96M95 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC42Q96M95 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 AC026471.5-201ENST00000615068 467 ntBASIC19.46■□□□□ 0.71
CCDC42Q96M95 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
CCDC42Q96M95 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
CCDC42Q96M95 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC42Q96M95 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC42Q96M95 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC42Q96M95 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC42Q96M95 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC19.45■□□□□ 0.7
CCDC42Q96M95 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC42Q96M95 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC42Q96M95 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 AL023806.1-201ENST00000603994 1649 ntBASIC19.45■□□□□ 0.7
CCDC42Q96M95 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
CCDC42Q96M95 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC42Q96M95 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CCDC42Q96M95 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
CCDC42Q96M95 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC42Q96M95 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CCDC42Q96M95 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CCDC42Q96M95 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC42Q96M95 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC42Q96M95 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC42Q96M95 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CCDC42Q96M95 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC42Q96M95 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC42Q96M95 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC42Q96M95 PRORSD1P-201ENST00000295112 541 ntBASIC19.44■□□□□ 0.7
CCDC42Q96M95 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC42Q96M95 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.44■□□□□ 0.7
CCDC42Q96M95 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC42Q96M95 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC42Q96M95 TSPY20P-201ENST00000450910 630 ntBASIC19.44■□□□□ 0.7
CCDC42Q96M95 DUTP2-201ENST00000519164 463 ntBASIC19.44■□□□□ 0.7
CCDC42Q96M95 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC42Q96M95 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC42Q96M95 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC42Q96M95 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC42Q96M95 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC42Q96M95 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CCDC42Q96M95 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC42Q96M95 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC42Q96M95 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC42Q96M95 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC42Q96M95 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC42Q96M95 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC42Q96M95 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms