Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.18■□□□□ 0.18
CPNE4Q96A23 KRT18P65-201ENST00000439811 1286 ntBASIC16.18■□□□□ 0.18
CPNE4Q96A23 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CPNE4Q96A23 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.18■□□□□ 0.18
CPNE4Q96A23 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.18■□□□□ 0.18
CPNE4Q96A23 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
CPNE4Q96A23 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.18■□□□□ 0.18
CPNE4Q96A23 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.18■□□□□ 0.18
CPNE4Q96A23 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CPNE4Q96A23 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CPNE4Q96A23 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CPNE4Q96A23 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CPNE4Q96A23 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CPNE4Q96A23 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CPNE4Q96A23 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC16.18■□□□□ 0.18
CPNE4Q96A23 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC16.18■□□□□ 0.18
CPNE4Q96A23 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CPNE4Q96A23 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CPNE4Q96A23 LINC00167-201ENST00000530583 1419 ntBASIC16.18■□□□□ 0.18
CPNE4Q96A23 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.18■□□□□ 0.18
CPNE4Q96A23 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CPNE4Q96A23 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CPNE4Q96A23 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.18■□□□□ 0.18
CPNE4Q96A23 NEFHP1-201ENST00000412845 2629 ntBASIC16.17■□□□□ 0.18
CPNE4Q96A23 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 AC135776.1-201ENST00000319817 2481 ntBASIC16.17■□□□□ 0.18
CPNE4Q96A23 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CPNE4Q96A23 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.17■□□□□ 0.18
CPNE4Q96A23 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.17■□□□□ 0.18
CPNE4Q96A23 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.17■□□□□ 0.18
CPNE4Q96A23 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.17■□□□□ 0.18
CPNE4Q96A23 AL592071.1-201ENST00000611956 408 ntBASIC16.17■□□□□ 0.18
CPNE4Q96A23 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.17■□□□□ 0.18
CPNE4Q96A23 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.17■□□□□ 0.18
CPNE4Q96A23 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.17■□□□□ 0.18
CPNE4Q96A23 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 AC009113.1-201ENST00000570267 2443 ntBASIC16.17■□□□□ 0.18
CPNE4Q96A23 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CPNE4Q96A23 KRT18P1-202ENST00000452408 1331 ntBASIC16.17■□□□□ 0.18
CPNE4Q96A23 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.17■□□□□ 0.18
CPNE4Q96A23 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.17■□□□□ 0.18
CPNE4Q96A23 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CPNE4Q96A23 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.16■□□□□ 0.18
CPNE4Q96A23 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE4Q96A23 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE4Q96A23 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
CPNE4Q96A23 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE4Q96A23 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE4Q96A23 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE4Q96A23 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE4Q96A23 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE4Q96A23 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CPNE4Q96A23 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE4Q96A23 VENTXP7-201ENST00000475503 772 ntBASIC16.16■□□□□ 0.18
CPNE4Q96A23 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.16■□□□□ 0.18
CPNE4Q96A23 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE4Q96A23 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
CPNE4Q96A23 AP002414.4-201ENST00000589764 1148 ntBASIC16.16■□□□□ 0.18
CPNE4Q96A23 NPAP1P7-201ENST00000613027 823 ntBASIC16.16■□□□□ 0.18
CPNE4Q96A23 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CPNE4Q96A23 AL096828.2-201ENST00000567259 1965 ntBASIC16.16■□□□□ 0.18
CPNE4Q96A23 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.16■□□□□ 0.18
CPNE4Q96A23 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE4Q96A23 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.16■□□□□ 0.18
CPNE4Q96A23 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE4Q96A23 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE4Q96A23 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CPNE4Q96A23 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms