Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 EGLN1P1-201ENST00000531623 762 ntBASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 AC009065.1-201ENST00000564055 1225 ntBASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.34■□□□□ 0.37
CLHC1Q8NHS4 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.33■□□□□ 0.37
CLHC1Q8NHS4 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.33■□□□□ 0.37
CLHC1Q8NHS4 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLHC1Q8NHS4 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLHC1Q8NHS4 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CLHC1Q8NHS4 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLHC1Q8NHS4 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLHC1Q8NHS4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.33■□□□□ 0.37
CLHC1Q8NHS4 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLHC1Q8NHS4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CLHC1Q8NHS4 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.33■□□□□ 0.37
CLHC1Q8NHS4 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLHC1Q8NHS4 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.33■□□□□ 0.37
CLHC1Q8NHS4 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 ECEL1P2-202ENST00000465689 757 ntBASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 NAPSB-206ENST00000562112 1266 ntBASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLHC1Q8NHS4 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 AC006116.8-202ENST00000587620 1550 ntBASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 SEC1P-202ENST00000473944 940 ntBASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
CLHC1Q8NHS4 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms