Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 AC243591.1-201ENST00000452967 1364 ntBASIC20.12■□□□□ 0.81
USP38Q8NB14 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
USP38Q8NB14 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.12■□□□□ 0.81
USP38Q8NB14 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.12■□□□□ 0.81
USP38Q8NB14 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.12■□□□□ 0.81
USP38Q8NB14 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
USP38Q8NB14 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.12■□□□□ 0.81
USP38Q8NB14 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.12■□□□□ 0.81
USP38Q8NB14 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC20.12■□□□□ 0.81
USP38Q8NB14 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.12■□□□□ 0.81
USP38Q8NB14 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC20.12■□□□□ 0.81
USP38Q8NB14 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC20.12■□□□□ 0.81
USP38Q8NB14 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP38Q8NB14 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.12■□□□□ 0.81
USP38Q8NB14 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.11■□□□□ 0.81
USP38Q8NB14 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
USP38Q8NB14 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
USP38Q8NB14 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.11■□□□□ 0.81
USP38Q8NB14 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
USP38Q8NB14 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.11■□□□□ 0.81
USP38Q8NB14 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.11■□□□□ 0.81
USP38Q8NB14 AL031284.1-201ENST00000419297 478 ntBASIC20.11■□□□□ 0.81
USP38Q8NB14 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.11■□□□□ 0.81
USP38Q8NB14 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC20.11■□□□□ 0.81
USP38Q8NB14 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.11■□□□□ 0.81
USP38Q8NB14 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.11■□□□□ 0.81
USP38Q8NB14 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 REXO1L6P-202ENST00000619970 1078 ntBASIC20.11■□□□□ 0.81
USP38Q8NB14 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
USP38Q8NB14 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP38Q8NB14 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 DDT-203ENST00000403754 569 ntTSL 3 BASIC20.1■□□□□ 0.81
USP38Q8NB14 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.1■□□□□ 0.81
USP38Q8NB14 DDT-206ENST00000430101 573 ntTSL 2 BASIC20.1■□□□□ 0.81
USP38Q8NB14 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
USP38Q8NB14 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.1■□□□□ 0.81
USP38Q8NB14 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.1■□□□□ 0.81
USP38Q8NB14 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.1■□□□□ 0.81
USP38Q8NB14 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 AC011840.4-201ENST00000578471 627 ntBASIC20.1■□□□□ 0.81
USP38Q8NB14 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.1■□□□□ 0.81
USP38Q8NB14 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.1■□□□□ 0.81
USP38Q8NB14 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC20.1■□□□□ 0.81
USP38Q8NB14 AC148477.8-201ENST00000624298 468 ntBASIC20.1■□□□□ 0.81
USP38Q8NB14 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.1■□□□□ 0.81
USP38Q8NB14 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP38Q8NB14 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
USP38Q8NB14 AL133373.2-201ENST00000623187 2828 ntBASIC20.1■□□□□ 0.81
USP38Q8NB14 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.1■□□□□ 0.81
USP38Q8NB14 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP38Q8NB14 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP38Q8NB14 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.09■□□□□ 0.81
USP38Q8NB14 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP38Q8NB14 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
USP38Q8NB14 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP38Q8NB14 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms