Protein–RNA interactions for Protein: Q5S007

LRRK2, Leucine-rich repeat serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 2,527 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK2Q5S007 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRRK2Q5S007 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 BASP1P1-201ENST00000430708 665 ntBASIC15.53■□□□□ 0.08
LRRK2Q5S007 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 AL132655.2-201ENST00000596276 594 ntBASIC15.53■□□□□ 0.08
LRRK2Q5S007 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRRK2Q5S007 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LRRK2Q5S007 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LRRK2Q5S007 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 AC148477.5-201ENST00000625164 1645 ntBASIC15.53■□□□□ 0.08
LRRK2Q5S007 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
LRRK2Q5S007 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.53■□□□□ 0.08
LRRK2Q5S007 FAM58DP-201ENST00000428076 619 ntBASIC15.53■□□□□ 0.08
LRRK2Q5S007 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 REXO1L3P-201ENST00000622202 1288 ntBASIC15.53■□□□□ 0.08
LRRK2Q5S007 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRRK2Q5S007 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.53■□□□□ 0.08
LRRK2Q5S007 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
LRRK2Q5S007 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRRK2Q5S007 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.08
LRRK2Q5S007 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRRK2Q5S007 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRRK2Q5S007 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC15.52■□□□□ 0.08
LRRK2Q5S007 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.52■□□□□ 0.08
LRRK2Q5S007 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.52■□□□□ 0.08
LRRK2Q5S007 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
LRRK2Q5S007 AL662799.1-202ENST00000614205 422 ntBASIC15.52■□□□□ 0.08
LRRK2Q5S007 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRRK2Q5S007 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRRK2Q5S007 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRRK2Q5S007 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
LRRK2Q5S007 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRRK2Q5S007 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
LRRK2Q5S007 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.52■□□□□ 0.08
LRRK2Q5S007 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
LRRK2Q5S007 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LRRK2Q5S007 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRRK2Q5S007 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC15.52■□□□□ 0.07
LRRK2Q5S007 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
LRRK2Q5S007 AC096633.1-201ENST00000422446 749 ntBASIC15.52■□□□□ 0.07
LRRK2Q5S007 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
LRRK2Q5S007 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.52■□□□□ 0.07
LRRK2Q5S007 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
LRRK2Q5S007 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC15.52■□□□□ 0.07
LRRK2Q5S007 AC140878.1-201ENST00000565277 250 ntBASIC15.52■□□□□ 0.07
LRRK2Q5S007 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
LRRK2Q5S007 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC15.52■□□□□ 0.07
LRRK2Q5S007 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRRK2Q5S007 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.07
LRRK2Q5S007 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
LRRK2Q5S007 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LRRK2Q5S007 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRK2Q5S007 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRK2Q5S007 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRK2Q5S007 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LRRK2Q5S007 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
LRRK2Q5S007 RAC2-204ENST00000406508 893 ntTSL 5 BASIC15.51■□□□□ 0.07
LRRK2Q5S007 KLF4P1-201ENST00000412782 1185 ntBASIC15.51■□□□□ 0.07
LRRK2Q5S007 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.51■□□□□ 0.07
LRRK2Q5S007 CYB561-217ENST00000582997 877 ntTSL 5 BASIC15.51■□□□□ 0.07
LRRK2Q5S007 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.51■□□□□ 0.07
LRRK2Q5S007 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRK2Q5S007 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LRRK2Q5S007 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRK2Q5S007 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC15.51■□□□□ 0.07
LRRK2Q5S007 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LRRK2Q5S007 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.51■□□□□ 0.07
LRRK2Q5S007 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRK2Q5S007 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
LRRK2Q5S007 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.51■□□□□ 0.07
LRRK2Q5S007 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRK2Q5S007 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC15.51■□□□□ 0.07
LRRK2Q5S007 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
LRRK2Q5S007 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
LRRK2Q5S007 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC15.51■□□□□ 0.07
LRRK2Q5S007 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRK2Q5S007 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
LRRK2Q5S007 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRK2Q5S007 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC15.5■□□□□ 0.07
LRRK2Q5S007 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRK2Q5S007 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRK2Q5S007 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
LRRK2Q5S007 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC15.5■□□□□ 0.07
LRRK2Q5S007 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LRRK2Q5S007 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRK2Q5S007 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRRK2Q5S007 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.5■□□□□ 0.07
LRRK2Q5S007 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms