Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM49D1C9J1S8 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 AC100803.2-201ENST00000562459 1963 ntBASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.08■□□□□ 0.49
TRIM49D1C9J1S8 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 RPS2P55-201ENST00000397318 883 ntBASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 AC107956.1-201ENST00000494359 873 ntBASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 AC104390.1-201ENST00000555663 520 ntBASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 AP005242.2-201ENST00000580065 1175 ntBASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM49D1C9J1S8 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 ITM2C-210ENST00000620962 501 ntBASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 AC112497.1-201ENST00000624824 639 ntBASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 AD000864.1-201ENST00000624076 2295 ntBASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
TRIM49D1C9J1S8 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 AC132938.6-201ENST00000623828 1655 ntBASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 AP001094.4-201ENST00000579008 2176 ntBASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TRIM49D1C9J1S8 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms