Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.18■□□□□ 0.5
TTC28Q96AY4 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.18■□□□□ 0.5
TTC28Q96AY4 AC099522.2-201ENST00000607001 744 ntBASIC18.18■□□□□ 0.5
TTC28Q96AY4 AC004706.3-202ENST00000621574 984 ntBASIC18.18■□□□□ 0.5
TTC28Q96AY4 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC18.18■□□□□ 0.5
TTC28Q96AY4 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.18■□□□□ 0.5
TTC28Q96AY4 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TTC28Q96AY4 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
TTC28Q96AY4 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TTC28Q96AY4 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TTC28Q96AY4 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
TTC28Q96AY4 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TTC28Q96AY4 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TTC28Q96AY4 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TTC28Q96AY4 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
TTC28Q96AY4 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TTC28Q96AY4 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TTC28Q96AY4 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TTC28Q96AY4 AC092580.3-201ENST00000430932 139 ntBASIC18.18■□□□□ 0.5
TTC28Q96AY4 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.18■□□□□ 0.5
TTC28Q96AY4 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TTC28Q96AY4 AC007064.4-201ENST00000637740 555 ntBASIC18.18■□□□□ 0.5
TTC28Q96AY4 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
TTC28Q96AY4 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
TTC28Q96AY4 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.18■□□□□ 0.5
TTC28Q96AY4 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TTC28Q96AY4 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TTC28Q96AY4 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 GIMAP3P-201ENST00000495150 836 ntBASIC18.17■□□□□ 0.5
TTC28Q96AY4 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 AC092933.1-201ENST00000393644 945 ntBASIC18.17■□□□□ 0.5
TTC28Q96AY4 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 RPS15P9-201ENST00000494093 319 ntBASIC18.17■□□□□ 0.5
TTC28Q96AY4 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
TTC28Q96AY4 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TTC28Q96AY4 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TTC28Q96AY4 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 RAB34-224ENST00000636513 888 ntTSL 5 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TTC28Q96AY4 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
TTC28Q96AY4 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TTC28Q96AY4 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TTC28Q96AY4 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TTC28Q96AY4 HAUS4P1-201ENST00000406739 1145 ntBASIC18.16■□□□□ 0.5
TTC28Q96AY4 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
TTC28Q96AY4 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TTC28Q96AY4 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TTC28Q96AY4 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TTC28Q96AY4 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TTC28Q96AY4 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TTC28Q96AY4 AC112191.1-201ENST00000523689 701 ntBASIC18.15■□□□□ 0.5
TTC28Q96AY4 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.15■□□□□ 0.5
TTC28Q96AY4 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.15■□□□□ 0.5
TTC28Q96AY4 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.15■□□□□ 0.5
TTC28Q96AY4 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TTC28Q96AY4 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC18.15■□□□□ 0.5
TTC28Q96AY4 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms