Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.951e-6■□□□□ 9.9
DDX55Q8NHQ9 SAE1-207ENST00000596995 2106 ntTSL 220.86■□□□□ 0.931e-6■□□□□ 9.9
DDX55Q8NHQ9 ERGIC3-217ENST00000488935 389 ntTSL 219.89■□□□□ 0.776e-12■□□□□ 9.9
DDX55Q8NHQ9 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.736e-12■□□□□ 9.9
DDX55Q8NHQ9 ERGIC3-216ENST00000488384 766 ntTSL 219.41■□□□□ 0.76e-12■□□□□ 9.9
DDX55Q8NHQ9 RPL22-203ENST00000465335 806 ntTSL 319.28■□□□□ 0.681e-6■□□□□ 9.9
DDX55Q8NHQ9 SAE1-205ENST00000594144 723 ntTSL 319.15■□□□□ 0.661e-6■□□□□ 9.9
DDX55Q8NHQ9 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.651e-6■□□□□ 9.9
DDX55Q8NHQ9 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC18.58■□□□□ 0.566e-12■□□□□ 9.9
DDX55Q8NHQ9 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.38■□□□□ 0.531e-6■□□□□ 9.9
DDX55Q8NHQ9 ATP6V0B-209ENST00000496131 962 ntTSL 317.09■□□□□ 0.331e-6■□□□□ 9.9
DDX55Q8NHQ9 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.326e-12■□□□□ 9.9
DDX55Q8NHQ9 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.217e-24■□□□□ 9.9
DDX55Q8NHQ9 TMED10-204ENST00000555873 1161 ntTSL 1 (best)15.95■□□□□ 0.145e-23■□□□□ 9.9
DDX55Q8NHQ9 SAE1-206ENST00000594526 709 ntTSL 315.9■□□□□ 0.141e-6■□□□□ 9.9
DDX55Q8NHQ9 AURKB-207ENST00000580998 746 ntTSL 315.83■□□□□ 0.126e-12■□□□□ 9.9
DDX55Q8NHQ9 SOD1-202ENST00000389995 865 ntTSL 3 BASIC15.07■□□□□ 01e-6■□□□□ 9.9
DDX55Q8NHQ9 ERGIC3-208ENST00000442139 472 ntTSL 314.86□□□□□ -0.036e-12■□□□□ 9.9
DDX55Q8NHQ9 AURKB-204ENST00000578549 939 ntTSL 1 (best) BASIC13.76□□□□□ -0.216e-12■□□□□ 9.9
DDX55Q8NHQ9 AURKB-213ENST00000584972 739 ntTSL 313.16□□□□□ -0.36e-12■□□□□ 9.9
DDX55Q8NHQ9 TGOLN2-202ENST00000377386 6489 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.377e-24■□□□□ 9.9
DDX55Q8NHQ9 ERGIC3-210ENST00000451605 520 ntTSL 211.91□□□□□ -0.56e-12■□□□□ 9.9
DDX55Q8NHQ9 SDHC-206ENST00000470743 832 ntTSL 511.87□□□□□ -0.511e-6■□□□□ 9.9
DDX55Q8NHQ9 SAE1-210ENST00000600706 744 ntTSL 511.84□□□□□ -0.511e-6■□□□□ 9.9
DDX55Q8NHQ9 RPL22-201ENST00000234875 2078 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.581e-6■□□□□ 9.9
DDX55Q8NHQ9 SMARCD1-207ENST00000549526 401 ntTSL 510.84□□□□□ -0.671e-6■□□□□ 9.9
DDX55Q8NHQ9 TGOLN2-201ENST00000282120 6419 ntAPPRIS ALT2 TSL 5 BASIC10.55□□□□□ -0.727e-24■□□□□ 9.9
DDX55Q8NHQ9 RPL22-202ENST00000462296 600 ntTSL 310.35□□□□□ -0.751e-6■□□□□ 9.9
DDX55Q8NHQ9 RPL22-207ENST00000484532 449 ntTSL 2 BASIC9.88□□□□□ -0.831e-6■□□□□ 9.9
DDX55Q8NHQ9 RPL22-208ENST00000497965 786 ntTSL 2 BASIC9.33□□□□□ -0.921e-6■□□□□ 9.9
DDX55Q8NHQ9 TMED10-202ENST00000555036 888 ntTSL 1 (best)7.89□□□□□ -1.155e-23■□□□□ 9.9
DDX55Q8NHQ9 SON-210ENST00000465834 957 ntTSL 37.8□□□□□ -1.161e-6■□□□□ 9.9
DDX55Q8NHQ9 C14orf2-206ENST00000554287 361 ntTSL 37.23□□□□□ -1.251e-15■□□□□ 9.9
DDX55Q8NHQ9 SON-212ENST00000470533 798 ntTSL 56.66□□□□□ -1.341e-6■□□□□ 9.9
DDX55Q8NHQ9 SON-219ENST00000491794 995 ntTSL 26.01□□□□□ -1.451e-6■□□□□ 9.9
DDX55Q8NHQ9 RPL22-205ENST00000471204 524 ntTSL 24.86□□□□□ -1.631e-6■□□□□ 9.9
DDX55Q8NHQ9 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.22e-15■□□□□ 9.9
DDX55Q8NHQ9 ALKBH5-202ENST00000490106 2146 ntTSL 1 (best)12.05□□□□□ -0.482e-15■□□□□ 9.9
DDX55Q8NHQ9 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.769e-11■□□□□ 9.9
DDX55Q8NHQ9 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC19.53■□□□□ 0.722e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-269ENST00000640692 1948 ntTSL 519.39■□□□□ 0.72e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-206ENST00000455050 1807 ntTSL 218.72■□□□□ 0.592e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.7■□□□□ 0.582e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC18.21■□□□□ 0.512e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC18.16■□□□□ 0.52e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-256ENST00000640194 1810 ntTSL 517.75■□□□□ 0.432e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-224ENST00000638671 1944 ntTSL 217.72■□□□□ 0.432e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-222ENST00000638612 2311 ntTSL 517.5■□□□□ 0.392e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.372e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-228ENST00000638714 1886 ntTSL 517.33■□□□□ 0.372e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-253ENST00000640108 2109 ntTSL 517.25■□□□□ 0.352e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-250ENST00000639932 2158 ntTSL 517.15■□□□□ 0.342e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-232ENST00000638938 1985 ntTSL 517.15■□□□□ 0.342e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-252ENST00000640107 2105 ntTSL 516.9■□□□□ 0.32e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-254ENST00000640123 847 ntTSL 516.86■□□□□ 0.292e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-226ENST00000638691 823 ntTSL 316.86■□□□□ 0.292e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-217ENST00000638445 2088 ntTSL 216.66■□□□□ 0.262e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-211ENST00000638246 2032 ntTSL 516.16■□□□□ 0.182e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-259ENST00000640272 2112 ntTSL 516.02■□□□□ 0.162e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-271ENST00000640986 2187 ntTSL 216.01■□□□□ 0.152e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-215ENST00000638387 2170 ntTSL 516.01■□□□□ 0.152e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC16■□□□□ 0.152e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-251ENST00000639984 1965 ntTSL 516■□□□□ 0.152e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-264ENST00000640585 2203 ntTSL 515.99■□□□□ 0.152e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-272ENST00000640996 2219 ntTSL 515.57■□□□□ 0.082e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-231ENST00000638927 1457 ntTSL 515.28■□□□□ 0.042e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-267ENST00000640666 2502 ntTSL 515.1■□□□□ 0.012e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-263ENST00000640549 1437 ntTSL 514.77□□□□□ -0.042e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-220ENST00000638537 1902 ntTSL 514.27□□□□□ -0.122e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-227ENST00000638710 2327 ntTSL 514.2□□□□□ -0.142e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-236ENST00000638978 2091 ntTSL 514.13□□□□□ -0.152e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-243ENST00000639292 1938 ntTSL 514.07□□□□□ -0.162e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-214ENST00000638383 2235 ntTSL 513.77□□□□□ -0.212e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-261ENST00000640364 2840 ntTSL 513.63□□□□□ -0.232e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-270ENST00000640940 1764 ntTSL 513.53□□□□□ -0.242e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-260ENST00000640324 2098 ntTSL 513.45□□□□□ -0.262e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-262ENST00000640542 2169 ntTSL 513.45□□□□□ -0.262e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-258ENST00000640253 1418 ntTSL 213.38□□□□□ -0.272e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-204ENST00000424705 2046 ntTSL 513.19□□□□□ -0.32e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-216ENST00000638415 1738 ntTSL 512.66□□□□□ -0.382e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-247ENST00000639664 1878 ntTSL 512.63□□□□□ -0.392e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-234ENST00000638962 2090 ntTSL 512.28□□□□□ -0.442e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-249ENST00000639872 1498 ntTSL 211.46□□□□□ -0.572e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-212ENST00000638277 879 ntTSL 511.06□□□□□ -0.642e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-229ENST00000638745 6087 ntTSL 510.8□□□□□ -0.682e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-225ENST00000638689 4314 ntTSL 510.64□□□□□ -0.712e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-210ENST00000638241 2006 ntTSL 210.57□□□□□ -0.722e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-235ENST00000638967 2194 ntTSL 59.71□□□□□ -0.862e-13■□□□□ 9.9
DDX55Q8NHQ9 PIGT-241ENST00000639250 3363 ntTSL 58.98□□□□□ -0.972e-13■□□□□ 9.9
DDX55Q8NHQ9 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.524e-10■□□□□ 9.9
DDX55Q8NHQ9 CLU-202ENST00000405140 2098 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.014e-10■□□□□ 9.9
DDX55Q8NHQ9 CLU-211ENST00000522299 2807 ntTSL 211.96□□□□□ -0.494e-10■□□□□ 9.9
DDX55Q8NHQ9 CLU-201ENST00000316403 3080 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.534e-10■□□□□ 9.9
DDX55Q8NHQ9 CLU-208ENST00000521770 520 ntTSL 29.56□□□□□ -0.884e-10■□□□□ 9.9
DDX55Q8NHQ9 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.324e-6■□□□□ 9.9
DDX55Q8NHQ9 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.14e-6■□□□□ 9.9
DDX55Q8NHQ9 KLC4-201ENST00000259708 2688 ntAPPRIS P4 TSL 2 BASIC13.4□□□□□ -0.264e-6■□□□□ 9.9
DDX55Q8NHQ9 KLC4-215ENST00000479388 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.44e-6■□□□□ 9.9
DDX55Q8NHQ9 KLC4-209ENST00000467906 3604 ntTSL 210.27□□□□□ -0.774e-6■□□□□ 9.9
DDX55Q8NHQ9 ATAD2-203ENST00000519124 4650 ntTSL 1 (best)6.62□□□□□ -1.354e-15■□□□□ 9.9
Retrieved 100 of 15,504 protein–RNA pairs in 345.2 ms