Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 AC090616.6-201ENST00000582640 721 ntBASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 HOXB1-202ENST00000577092 1414 ntBASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SH3RF1Q7Z6J0 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 SDHAP2-201ENST00000455183 2001 ntBASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 IGHV3-47-201ENST00000425060 335 ntBASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SH3RF1Q7Z6J0 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 AC026471.1-201ENST00000564629 3026 ntBASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 AL163051.1-201ENST00000569214 1512 ntBASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 AL390719.2-201ENST00000606993 987 ntBASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 AC005332.8-201ENST00000622750 2735 ntBASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SH3RF1Q7Z6J0 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms