Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
NPHP3Q7Z494 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC24.37■■□□□ 1.49
NPHP3Q7Z494 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC24.37■■□□□ 1.49
NPHP3Q7Z494 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
NPHP3Q7Z494 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC24.37■■□□□ 1.49
NPHP3Q7Z494 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NPHP3Q7Z494 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC24.37■■□□□ 1.49
NPHP3Q7Z494 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC24.37■■□□□ 1.49
NPHP3Q7Z494 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
NPHP3Q7Z494 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC24.37■■□□□ 1.49
NPHP3Q7Z494 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC24.37■■□□□ 1.49
NPHP3Q7Z494 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 IGLL3P-201ENST00000412472 434 ntBASIC24.36■■□□□ 1.49
NPHP3Q7Z494 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 RPS15P9-201ENST00000494093 319 ntBASIC24.36■■□□□ 1.49
NPHP3Q7Z494 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 ME2-218ENST00000640965 2476 ntTSL 5 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 AL158211.5-201ENST00000623583 2518 ntBASIC24.36■■□□□ 1.49
NPHP3Q7Z494 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 ADM-208ENST00000534464 1640 ntTSL 2 BASIC24.36■■□□□ 1.49
NPHP3Q7Z494 PCDHAC2-203ENST00000615316 3011 ntBASIC24.36■■□□□ 1.49
NPHP3Q7Z494 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 AL020989.1-201ENST00000422979 469 ntBASIC24.35■■□□□ 1.49
NPHP3Q7Z494 AC103564.2-201ENST00000432853 1299 ntBASIC24.35■■□□□ 1.49
NPHP3Q7Z494 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 NCF1C-201ENST00000438382 1427 ntBASIC24.35■■□□□ 1.49
NPHP3Q7Z494 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 AL139400.1-201ENST00000366220 510 ntBASIC24.35■■□□□ 1.49
NPHP3Q7Z494 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 ATP6V0CP3-201ENST00000417255 467 ntBASIC24.35■■□□□ 1.49
NPHP3Q7Z494 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 CD63-210ENST00000550776 870 ntTSL 5 BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 AC004790.2-201ENST00000623588 572 ntBASIC24.35■■□□□ 1.49
NPHP3Q7Z494 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
NPHP3Q7Z494 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 CIPC-205ENST00000555437 566 ntTSL 3 BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC24.34■■□□□ 1.49
NPHP3Q7Z494 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP3Q7Z494 AL161938.1-201ENST00000569833 2180 ntBASIC24.33■■□□□ 1.49
NPHP3Q7Z494 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC24.33■■□□□ 1.49
NPHP3Q7Z494 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP3Q7Z494 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP3Q7Z494 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP3Q7Z494 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP3Q7Z494 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP3Q7Z494 AL499627.1-201ENST00000569373 2188 ntBASIC24.33■■□□□ 1.49
NPHP3Q7Z494 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
NPHP3Q7Z494 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.48
NPHP3Q7Z494 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms