Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
YBX1P67809 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.61■□□□□ 0.41
YBX1P67809 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
YBX1P67809 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
YBX1P67809 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
YBX1P67809 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
YBX1P67809 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC17.61■□□□□ 0.41
YBX1P67809 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
YBX1P67809 FAM86EP-206ENST00000510506 987 ntBASIC17.61■□□□□ 0.41
YBX1P67809 ZNF444P1-201ENST00000559497 298 ntBASIC17.61■□□□□ 0.41
YBX1P67809 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
YBX1P67809 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.61■□□□□ 0.41
YBX1P67809 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.61■□□□□ 0.41
YBX1P67809 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.61■□□□□ 0.41
YBX1P67809 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.61■□□□□ 0.41
YBX1P67809 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
YBX1P67809 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
YBX1P67809 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.61■□□□□ 0.41
YBX1P67809 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.61■□□□□ 0.41
YBX1P67809 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.61■□□□□ 0.41
YBX1P67809 PHGDH-209ENST00000641074 1780 ntBASIC17.61■□□□□ 0.41
YBX1P67809 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
YBX1P67809 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
YBX1P67809 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
YBX1P67809 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.6■□□□□ 0.41
YBX1P67809 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.6■□□□□ 0.41
YBX1P67809 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.6■□□□□ 0.41
YBX1P67809 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.6■□□□□ 0.41
YBX1P67809 RNF126P1-202ENST00000569893 925 ntBASIC17.6■□□□□ 0.41
YBX1P67809 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.6■□□□□ 0.41
YBX1P67809 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.6■□□□□ 0.41
YBX1P67809 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
YBX1P67809 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 AL645608.8-201ENST00000606034 2086 ntBASIC17.6■□□□□ 0.41
YBX1P67809 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
YBX1P67809 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.6■□□□□ 0.41
YBX1P67809 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
YBX1P67809 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
YBX1P67809 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
YBX1P67809 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.59■□□□□ 0.41
YBX1P67809 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
YBX1P67809 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.59■□□□□ 0.41
YBX1P67809 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
YBX1P67809 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
YBX1P67809 GMCL1P1-201ENST00000463439 1581 ntBASIC17.59■□□□□ 0.41
YBX1P67809 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
YBX1P67809 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.59■□□□□ 0.41
YBX1P67809 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.59■□□□□ 0.41
YBX1P67809 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
YBX1P67809 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
YBX1P67809 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
YBX1P67809 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
YBX1P67809 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.59■□□□□ 0.41
YBX1P67809 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
YBX1P67809 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.59■□□□□ 0.41
YBX1P67809 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
YBX1P67809 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.59■□□□□ 0.41
YBX1P67809 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.59■□□□□ 0.41
YBX1P67809 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.59■□□□□ 0.41
YBX1P67809 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.59■□□□□ 0.41
YBX1P67809 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.59■□□□□ 0.41
YBX1P67809 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.59■□□□□ 0.41
YBX1P67809 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.59■□□□□ 0.41
YBX1P67809 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC17.59■□□□□ 0.41
YBX1P67809 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
YBX1P67809 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
YBX1P67809 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
YBX1P67809 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
YBX1P67809 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.59■□□□□ 0.41
YBX1P67809 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
YBX1P67809 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
YBX1P67809 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
YBX1P67809 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
YBX1P67809 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
YBX1P67809 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
YBX1P67809 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.58■□□□□ 0.41
YBX1P67809 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
YBX1P67809 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
YBX1P67809 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
YBX1P67809 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
YBX1P67809 AC005332.1-201ENST00000577698 1310 ntBASIC17.58■□□□□ 0.4
YBX1P67809 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
YBX1P67809 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
YBX1P67809 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
YBX1P67809 MIR662-201ENST00000384847 95 ntBASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms