Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTCFP49711 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CTCFP49711 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.85■□□□□ 0.93
CTCFP49711 TCF3P1-201ENST00000423021 1937 ntBASIC20.84■□□□□ 0.93
CTCFP49711 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC20.84■□□□□ 0.93
CTCFP49711 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CTCFP49711 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CTCFP49711 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTCFP49711 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTCFP49711 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.84■□□□□ 0.93
CTCFP49711 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTCFP49711 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CTCFP49711 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTCFP49711 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTCFP49711 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTCFP49711 ELK2BP-201ENST00000415014 1224 ntBASIC20.84■□□□□ 0.93
CTCFP49711 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC20.84■□□□□ 0.93
CTCFP49711 BASP1P1-201ENST00000430708 665 ntBASIC20.84■□□□□ 0.93
CTCFP49711 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.84■□□□□ 0.93
CTCFP49711 AP005018.1-201ENST00000525475 301 ntBASIC20.84■□□□□ 0.93
CTCFP49711 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
CTCFP49711 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC20.84■□□□□ 0.93
CTCFP49711 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC20.84■□□□□ 0.93
CTCFP49711 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC20.84■□□□□ 0.93
CTCFP49711 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.84■□□□□ 0.93
CTCFP49711 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CTCFP49711 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC20.84■□□□□ 0.93
CTCFP49711 AL358472.5-202ENST00000641448 1267 ntBASIC20.84■□□□□ 0.93
CTCFP49711 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTCFP49711 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTCFP49711 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
CTCFP49711 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTCFP49711 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.84■□□□□ 0.93
CTCFP49711 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTCFP49711 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTCFP49711 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CTCFP49711 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CTCFP49711 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CTCFP49711 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC20.83■□□□□ 0.93
CTCFP49711 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20.83■□□□□ 0.93
CTCFP49711 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CTCFP49711 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
CTCFP49711 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTCFP49711 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTCFP49711 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTCFP49711 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTCFP49711 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CTCFP49711 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.83■□□□□ 0.93
CTCFP49711 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CTCFP49711 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTCFP49711 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CTCFP49711 CBR1-202ENST00000399191 838 ntTSL 3 BASIC20.83■□□□□ 0.93
CTCFP49711 CTNS-203ENST00000399306 803 ntTSL 3 BASIC20.83■□□□□ 0.93
CTCFP49711 AC004461.1-201ENST00000412461 403 ntBASIC20.83■□□□□ 0.93
CTCFP49711 FAM58CP-201ENST00000435741 640 ntBASIC20.83■□□□□ 0.93
CTCFP49711 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CTCFP49711 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC20.83■□□□□ 0.93
CTCFP49711 BX005266.1-201ENST00000473402 457 ntBASIC20.83■□□□□ 0.93
CTCFP49711 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC20.83■□□□□ 0.93
CTCFP49711 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC20.83■□□□□ 0.93
CTCFP49711 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC20.83■□□□□ 0.93
CTCFP49711 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC20.83■□□□□ 0.93
CTCFP49711 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTCFP49711 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC20.83■□□□□ 0.93
CTCFP49711 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CTCFP49711 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC20.83■□□□□ 0.93
CTCFP49711 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CTCFP49711 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CTCFP49711 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.83■□□□□ 0.92
CTCFP49711 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.83■□□□□ 0.92
CTCFP49711 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CTCFP49711 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CTCFP49711 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CTCFP49711 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CTCFP49711 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CTCFP49711 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CTCFP49711 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CTCFP49711 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CTCFP49711 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.83■□□□□ 0.92
CTCFP49711 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CTCFP49711 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTCFP49711 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CTCFP49711 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTCFP49711 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTCFP49711 SDHAP1-207ENST00000440850 2000 ntBASIC20.82■□□□□ 0.92
CTCFP49711 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CTCFP49711 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.82■□□□□ 0.92
CTCFP49711 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CTCFP49711 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CTCFP49711 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CTCFP49711 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.82■□□□□ 0.92
CTCFP49711 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CTCFP49711 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC20.82■□□□□ 0.92
CTCFP49711 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.82■□□□□ 0.92
CTCFP49711 AC113404.2-201ENST00000507884 177 ntBASIC20.82■□□□□ 0.92
CTCFP49711 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC20.82■□□□□ 0.92
CTCFP49711 DUX4L27-201ENST00000554796 1261 ntBASIC20.82■□□□□ 0.92
CTCFP49711 NAA60-208ENST00000570819 833 ntTSL 2 BASIC20.82■□□□□ 0.92
CTCFP49711 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC20.82■□□□□ 0.92
CTCFP49711 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms