Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PRKNO60260 AC132938.6-201ENST00000623828 1655 ntBASIC16.81■□□□□ 0.28
PRKNO60260 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PRKNO60260 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.81■□□□□ 0.28
PRKNO60260 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.8■□□□□ 0.28
PRKNO60260 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.8■□□□□ 0.28
PRKNO60260 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC16.8■□□□□ 0.28
PRKNO60260 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.8■□□□□ 0.28
PRKNO60260 BICD1-207ENST00000551848 1962 ntBASIC16.8■□□□□ 0.28
PRKNO60260 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.8■□□□□ 0.28
PRKNO60260 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PRKNO60260 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.8■□□□□ 0.28
PRKNO60260 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PRKNO60260 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
PRKNO60260 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.8■□□□□ 0.28
PRKNO60260 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.8■□□□□ 0.28
PRKNO60260 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC16.8■□□□□ 0.28
PRKNO60260 RN7SL606P-201ENST00000472779 293 ntBASIC16.8■□□□□ 0.28
PRKNO60260 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.8■□□□□ 0.28
PRKNO60260 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.8■□□□□ 0.28
PRKNO60260 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 AC092329.2-201ENST00000598402 547 ntBASIC16.8■□□□□ 0.28
PRKNO60260 AL592071.1-201ENST00000611956 408 ntBASIC16.8■□□□□ 0.28
PRKNO60260 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.8■□□□□ 0.28
PRKNO60260 AC124864.1-201ENST00000623408 392 ntBASIC16.8■□□□□ 0.28
PRKNO60260 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.8■□□□□ 0.28
PRKNO60260 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.8■□□□□ 0.28
PRKNO60260 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
PRKNO60260 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.8■□□□□ 0.28
PRKNO60260 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PRKNO60260 LINC00167-201ENST00000530583 1419 ntBASIC16.79■□□□□ 0.28
PRKNO60260 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
PRKNO60260 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.79■□□□□ 0.28
PRKNO60260 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.79■□□□□ 0.28
PRKNO60260 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
PRKNO60260 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.79■□□□□ 0.28
PRKNO60260 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
PRKNO60260 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 AC012313.10-201ENST00000623509 926 ntBASIC16.79■□□□□ 0.28
PRKNO60260 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
PRKNO60260 AC135050.7-201ENST00000624508 2218 ntBASIC16.79■□□□□ 0.28
PRKNO60260 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
PRKNO60260 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.79■□□□□ 0.28
PRKNO60260 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
PRKNO60260 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
PRKNO60260 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
PRKNO60260 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
PRKNO60260 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.78■□□□□ 0.28
PRKNO60260 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.78■□□□□ 0.28
PRKNO60260 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.78■□□□□ 0.28
PRKNO60260 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
PRKNO60260 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PRKNO60260 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PRKNO60260 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
PRKNO60260 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.78■□□□□ 0.28
PRKNO60260 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.78■□□□□ 0.28
PRKNO60260 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PRKNO60260 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PRKNO60260 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PRKNO60260 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PRKNO60260 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.78■□□□□ 0.28
PRKNO60260 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PRKNO60260 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PRKNO60260 AL845331.1-201ENST00000424978 1190 ntBASIC16.78■□□□□ 0.28
PRKNO60260 DRAXINP1-201ENST00000437611 948 ntBASIC16.78■□□□□ 0.28
PRKNO60260 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PRKNO60260 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PRKNO60260 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms