Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.21■□□□□ 0.19
COL6A6A6NMZ7 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
COL6A6A6NMZ7 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC16.21■□□□□ 0.18
COL6A6A6NMZ7 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC16.21■□□□□ 0.18
COL6A6A6NMZ7 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL6A6A6NMZ7 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC16.21■□□□□ 0.18
COL6A6A6NMZ7 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
COL6A6A6NMZ7 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 BAD-202ENST00000394531 631 ntTSL 3 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 RNA5SP421-201ENST00000516864 134 ntBASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 AL359881.2-201ENST00000602973 570 ntBASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 MIR661-201ENST00000384842 89 ntBASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 AC055876.3-201ENST00000431496 288 ntBASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 FAM86GP-201ENST00000448322 971 ntBASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 CRB3P1-201ENST00000449338 276 ntBASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 BX005266.1-201ENST00000473402 457 ntBASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 KRT19P2-202ENST00000557173 1012 ntBASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 AC004835.2-201ENST00000603762 682 ntBASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 AC138649.4-201ENST00000612222 287 ntBASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.2■□□□□ 0.18
COL6A6A6NMZ7 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 ASL-204ENST00000395331 1538 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 TFAMP1-201ENST00000412727 736 ntBASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 FAM207CP-201ENST00000443486 507 ntBASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 AP000867.4-201ENST00000641616 219 ntBASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 AC006504.4-201ENST00000592118 1568 ntBASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 ELK2BP-201ENST00000415014 1224 ntBASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
COL6A6A6NMZ7 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL6A6A6NMZ7 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms