Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC31.11■■■□□ 2.57
CCDC88BA6NC98 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC31.11■■■□□ 2.57
CCDC88BA6NC98 AC211486.1-202ENST00000416371 468 ntBASIC31.11■■■□□ 2.57
CCDC88BA6NC98 PON3-205ENST00000451904 1053 ntTSL 3 BASIC31.11■■■□□ 2.57
CCDC88BA6NC98 ARTN-206ENST00000472435 402 ntTSL 3 BASIC31.11■■■□□ 2.57
CCDC88BA6NC98 AC211476.1-201ENST00000503899 468 ntBASIC31.11■■■□□ 2.57
CCDC88BA6NC98 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC31.11■■■□□ 2.57
CCDC88BA6NC98 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
CCDC88BA6NC98 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC31.11■■■□□ 2.57
CCDC88BA6NC98 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC31.11■■■□□ 2.57
CCDC88BA6NC98 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
CCDC88BA6NC98 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC31.11■■■□□ 2.57
CCDC88BA6NC98 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
CCDC88BA6NC98 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC88BA6NC98 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC31.09■■■□□ 2.57
CCDC88BA6NC98 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC88BA6NC98 LBH-203ENST00000404397 543 ntTSL 4 BASIC31.09■■■□□ 2.57
CCDC88BA6NC98 HCG4B-203ENST00000450128 991 ntBASIC31.09■■■□□ 2.57
CCDC88BA6NC98 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC31.09■■■□□ 2.57
CCDC88BA6NC98 AC126763.1-201ENST00000552015 2118 ntBASIC31.09■■■□□ 2.57
CCDC88BA6NC98 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC31.09■■■□□ 2.57
CCDC88BA6NC98 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC88BA6NC98 MED29-202ENST00000594368 1471 ntTSL 2 BASIC31.09■■■□□ 2.57
CCDC88BA6NC98 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC88BA6NC98 AL049757.1-201ENST00000616842 1596 ntBASIC31.09■■■□□ 2.57
CCDC88BA6NC98 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC88BA6NC98 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC31.09■■■□□ 2.57
CCDC88BA6NC98 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC88BA6NC98 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC31.09■■■□□ 2.57
CCDC88BA6NC98 TCAP-202ENST00000578283 583 ntTSL 5 BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 AC019129.2-201ENST00000609837 1235 ntBASIC31.08■■■□□ 2.57
CCDC88BA6NC98 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 SIRPAP1-201ENST00000448467 1770 ntBASIC31.08■■■□□ 2.57
CCDC88BA6NC98 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 COX5BP2-201ENST00000392354 334 ntBASIC31.08■■■□□ 2.57
CCDC88BA6NC98 IGLL3P-201ENST00000412472 434 ntBASIC31.08■■■□□ 2.57
CCDC88BA6NC98 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 LINC02084-201ENST00000606069 1096 ntBASIC31.08■■■□□ 2.57
CCDC88BA6NC98 AL513190.1-201ENST00000621254 727 ntBASIC31.08■■■□□ 2.57
CCDC88BA6NC98 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC31.08■■■□□ 2.57
CCDC88BA6NC98 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC31.07■■■□□ 2.56
CCDC88BA6NC98 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC31.07■■■□□ 2.56
CCDC88BA6NC98 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC31.07■■■□□ 2.56
CCDC88BA6NC98 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC31.07■■■□□ 2.56
CCDC88BA6NC98 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC31.07■■■□□ 2.56
CCDC88BA6NC98 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC31.07■■■□□ 2.56
CCDC88BA6NC98 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC31.07■■■□□ 2.56
CCDC88BA6NC98 METTL21AP1-201ENST00000438852 635 ntBASIC31.07■■■□□ 2.56
CCDC88BA6NC98 AC018845.2-201ENST00000568326 409 ntBASIC31.07■■■□□ 2.56
CCDC88BA6NC98 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC31.07■■■□□ 2.56
CCDC88BA6NC98 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
CCDC88BA6NC98 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC31.06■■■□□ 2.56
CCDC88BA6NC98 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC31.06■■■□□ 2.56
CCDC88BA6NC98 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CCDC88BA6NC98 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CCDC88BA6NC98 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC31.06■■■□□ 2.56
CCDC88BA6NC98 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
CCDC88BA6NC98 COX5A-202ENST00000562233 441 ntTSL 3 BASIC31.06■■■□□ 2.56
CCDC88BA6NC98 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC31.06■■■□□ 2.56
CCDC88BA6NC98 AC079781.4-201ENST00000641908 219 ntBASIC31.06■■■□□ 2.56
CCDC88BA6NC98 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
CCDC88BA6NC98 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC88BA6NC98 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC88BA6NC98 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC31.05■■■□□ 2.56
CCDC88BA6NC98 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC88BA6NC98 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC31.05■■■□□ 2.56
CCDC88BA6NC98 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
CCDC88BA6NC98 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC31.05■■■□□ 2.56
CCDC88BA6NC98 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC31.05■■■□□ 2.56
CCDC88BA6NC98 AC103564.2-201ENST00000432853 1299 ntBASIC31.05■■■□□ 2.56
CCDC88BA6NC98 DUTP2-201ENST00000519164 463 ntBASIC31.05■■■□□ 2.56
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms