Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
USP28Q96RU2 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.7■□□□□ 0.9
USP28Q96RU2 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
USP28Q96RU2 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP28Q96RU2 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.69■□□□□ 0.9
USP28Q96RU2 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
USP28Q96RU2 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP28Q96RU2 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP28Q96RU2 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.69■□□□□ 0.9
USP28Q96RU2 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP28Q96RU2 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC20.69■□□□□ 0.9
USP28Q96RU2 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP28Q96RU2 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP28Q96RU2 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP28Q96RU2 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.69■□□□□ 0.9
USP28Q96RU2 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.69■□□□□ 0.9
USP28Q96RU2 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC20.69■□□□□ 0.9
USP28Q96RU2 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.69■□□□□ 0.9
USP28Q96RU2 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.69■□□□□ 0.9
USP28Q96RU2 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
USP28Q96RU2 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP28Q96RU2 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.69■□□□□ 0.9
USP28Q96RU2 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP28Q96RU2 LINC01568-207ENST00000641790 1380 ntBASIC20.69■□□□□ 0.9
USP28Q96RU2 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP28Q96RU2 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP28Q96RU2 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
USP28Q96RU2 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
USP28Q96RU2 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP28Q96RU2 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
USP28Q96RU2 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.69■□□□□ 0.9
USP28Q96RU2 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.69■□□□□ 0.9
USP28Q96RU2 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP28Q96RU2 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP28Q96RU2 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
USP28Q96RU2 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
USP28Q96RU2 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP28Q96RU2 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.68■□□□□ 0.9
USP28Q96RU2 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP28Q96RU2 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.68■□□□□ 0.9
USP28Q96RU2 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.68■□□□□ 0.9
USP28Q96RU2 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
USP28Q96RU2 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP28Q96RU2 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
USP28Q96RU2 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP28Q96RU2 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
USP28Q96RU2 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP28Q96RU2 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC20.68■□□□□ 0.9
USP28Q96RU2 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
USP28Q96RU2 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP28Q96RU2 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP28Q96RU2 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
USP28Q96RU2 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP28Q96RU2 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP28Q96RU2 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP28Q96RU2 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP28Q96RU2 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP28Q96RU2 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.67■□□□□ 0.9
USP28Q96RU2 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP28Q96RU2 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
USP28Q96RU2 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP28Q96RU2 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
USP28Q96RU2 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
USP28Q96RU2 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
USP28Q96RU2 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.67■□□□□ 0.9
USP28Q96RU2 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP28Q96RU2 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.67■□□□□ 0.9
USP28Q96RU2 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.67■□□□□ 0.9
USP28Q96RU2 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP28Q96RU2 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.67■□□□□ 0.9
USP28Q96RU2 AL512604.3-201ENST00000569583 964 ntBASIC20.67■□□□□ 0.9
USP28Q96RU2 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP28Q96RU2 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
USP28Q96RU2 AC092865.7-201ENST00000641832 219 ntBASIC20.67■□□□□ 0.9
USP28Q96RU2 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP28Q96RU2 AL355312.1-201ENST00000407115 2176 ntBASIC20.67■□□□□ 0.9
USP28Q96RU2 AC108860.2-201ENST00000562760 2183 ntBASIC20.67■□□□□ 0.9
USP28Q96RU2 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP28Q96RU2 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP28Q96RU2 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
USP28Q96RU2 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
USP28Q96RU2 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP28Q96RU2 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC20.67■□□□□ 0.9
USP28Q96RU2 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.67■□□□□ 0.9
USP28Q96RU2 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.67■□□□□ 0.9
USP28Q96RU2 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
USP28Q96RU2 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP28Q96RU2 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP28Q96RU2 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP28Q96RU2 AC141586.5-201ENST00000624546 2050 ntBASIC20.66■□□□□ 0.9
USP28Q96RU2 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP28Q96RU2 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP28Q96RU2 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
USP28Q96RU2 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.66■□□□□ 0.9
USP28Q96RU2 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.66■□□□□ 0.9
USP28Q96RU2 PVRIG2P-201ENST00000435460 978 ntBASIC20.66■□□□□ 0.9
USP28Q96RU2 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.66■□□□□ 0.9
USP28Q96RU2 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.66■□□□□ 0.9
USP28Q96RU2 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.66■□□□□ 0.9
USP28Q96RU2 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms