Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.18■□□□□ 0.82
USP38Q8NB14 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
USP38Q8NB14 AC005332.8-201ENST00000622750 2735 ntBASIC20.18■□□□□ 0.82
USP38Q8NB14 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
USP38Q8NB14 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 RN7SL606P-201ENST00000472779 293 ntBASIC20.18■□□□□ 0.82
USP38Q8NB14 AC073648.2-201ENST00000510116 352 ntBASIC20.18■□□□□ 0.82
USP38Q8NB14 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.18■□□□□ 0.82
USP38Q8NB14 AC106730.1-201ENST00000566722 1090 ntBASIC20.18■□□□□ 0.82
USP38Q8NB14 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC20.18■□□□□ 0.82
USP38Q8NB14 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.18■□□□□ 0.82
USP38Q8NB14 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC20.18■□□□□ 0.82
USP38Q8NB14 TERC-201ENST00000602385 541 ntBASIC20.18■□□□□ 0.82
USP38Q8NB14 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.18■□□□□ 0.82
USP38Q8NB14 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP38Q8NB14 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.17■□□□□ 0.82
USP38Q8NB14 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 BICD1-207ENST00000551848 1962 ntBASIC20.17■□□□□ 0.82
USP38Q8NB14 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC20.17■□□□□ 0.82
USP38Q8NB14 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.17■□□□□ 0.82
USP38Q8NB14 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.17■□□□□ 0.82
USP38Q8NB14 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
USP38Q8NB14 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC20.17■□□□□ 0.82
USP38Q8NB14 VENTXP7-201ENST00000475503 772 ntBASIC20.17■□□□□ 0.82
USP38Q8NB14 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.17■□□□□ 0.82
USP38Q8NB14 AC074051.2-201ENST00000565115 352 ntBASIC20.17■□□□□ 0.82
USP38Q8NB14 AL592071.1-201ENST00000611956 408 ntBASIC20.17■□□□□ 0.82
USP38Q8NB14 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.17■□□□□ 0.82
USP38Q8NB14 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.17■□□□□ 0.82
USP38Q8NB14 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC20.17■□□□□ 0.82
USP38Q8NB14 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.17■□□□□ 0.82
USP38Q8NB14 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
USP38Q8NB14 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
USP38Q8NB14 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP38Q8NB14 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP38Q8NB14 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP38Q8NB14 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.16■□□□□ 0.82
USP38Q8NB14 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.16■□□□□ 0.82
USP38Q8NB14 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
USP38Q8NB14 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP38Q8NB14 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.16■□□□□ 0.82
USP38Q8NB14 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP38Q8NB14 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC20.16■□□□□ 0.82
USP38Q8NB14 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP38Q8NB14 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP38Q8NB14 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP38Q8NB14 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.16■□□□□ 0.82
USP38Q8NB14 AF238378.1-201ENST00000526806 358 ntBASIC20.16■□□□□ 0.82
USP38Q8NB14 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC20.16■□□□□ 0.82
USP38Q8NB14 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC20.16■□□□□ 0.82
USP38Q8NB14 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.16■□□□□ 0.82
USP38Q8NB14 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.16■□□□□ 0.82
USP38Q8NB14 AL353692.3-201ENST00000407031 1396 ntBASIC20.16■□□□□ 0.82
USP38Q8NB14 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP38Q8NB14 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.16■□□□□ 0.82
USP38Q8NB14 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USP38Q8NB14 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
USP38Q8NB14 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP38Q8NB14 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
USP38Q8NB14 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.16■□□□□ 0.82
USP38Q8NB14 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP38Q8NB14 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
USP38Q8NB14 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
USP38Q8NB14 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP38Q8NB14 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP38Q8NB14 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP38Q8NB14 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC20.15■□□□□ 0.82
USP38Q8NB14 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP38Q8NB14 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
USP38Q8NB14 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP38Q8NB14 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC20.15■□□□□ 0.82
USP38Q8NB14 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.15■□□□□ 0.82
USP38Q8NB14 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
USP38Q8NB14 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms