Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 AC005082.1-201ENST00000413042 2259 ntBASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
NPAS3Q8IXF0 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 AC092183.1-201ENST00000469884 875 ntBASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 AC034105.1-201ENST00000563488 319 ntBASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 AC140113.2-201ENST00000604370 208 ntBASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.66■□□□□ 0.58
NPAS3Q8IXF0 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 MED15P5-201ENST00000423150 992 ntBASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 NKAPP1-205ENST00000585790 367 ntBASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 AL356488.2-201ENST00000602755 427 ntBASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 FAM197Y3-203ENST00000618346 717 ntBASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 AC008735.5-201ENST00000623544 497 ntBASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
NPAS3Q8IXF0 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
NPAS3Q8IXF0 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
NPAS3Q8IXF0 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
NPAS3Q8IXF0 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 FAM220CP-201ENST00000395253 831 ntBASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.64■□□□□ 0.57
NPAS3Q8IXF0 RNA5SP415-201ENST00000517246 115 ntBASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms