Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC21.32■■□□□ 1
RHBDL3P58872 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
RHBDL3P58872 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RHBDL3P58872 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
RHBDL3P58872 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC21.32■■□□□ 1
RHBDL3P58872 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
RHBDL3P58872 AC025062.2-201ENST00000605477 670 ntBASIC21.32■■□□□ 1
RHBDL3P58872 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
RHBDL3P58872 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.32■■□□□ 1
RHBDL3P58872 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC21.32■■□□□ 1
RHBDL3P58872 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RHBDL3P58872 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RHBDL3P58872 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
RHBDL3P58872 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
RHBDL3P58872 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RHBDL3P58872 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC21.31■■□□□ 1
RHBDL3P58872 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.31■■□□□ 1
RHBDL3P58872 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.31■■□□□ 1
RHBDL3P58872 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.31■■□□□ 1
RHBDL3P58872 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.31■■□□□ 1
RHBDL3P58872 TBC1D3P5-201ENST00000579401 1545 ntBASIC21.31■■□□□ 1
RHBDL3P58872 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RHBDL3P58872 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RHBDL3P58872 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RHBDL3P58872 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
RHBDL3P58872 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC21.31■■□□□ 1
RHBDL3P58872 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
RHBDL3P58872 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC21.31■■□□□ 1
RHBDL3P58872 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC21.31■■□□□ 1
RHBDL3P58872 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RHBDL3P58872 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC21.31■■□□□ 1
RHBDL3P58872 LITAF-211ENST00000572255 516 ntTSL 4 BASIC21.31■■□□□ 1
RHBDL3P58872 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
RHBDL3P58872 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC21.31■■□□□ 1
RHBDL3P58872 AC023511.2-201ENST00000618803 211 ntBASIC21.31■■□□□ 1
RHBDL3P58872 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RHBDL3P58872 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC21.31■■□□□ 1
RHBDL3P58872 AL356309.3-201ENST00000624132 1934 ntBASIC21.31■■□□□ 1
RHBDL3P58872 AC093503.3-201ENST00000624917 2352 ntBASIC21.31■■□□□ 1
RHBDL3P58872 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC21.31■■□□□ 1
RHBDL3P58872 BX323043.1-201ENST00000641006 1765 ntBASIC21.31■■□□□ 1
RHBDL3P58872 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.3■■□□□ 1
RHBDL3P58872 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
RHBDL3P58872 AC093677.2-201ENST00000600169 1863 ntBASIC21.3■■□□□ 1
RHBDL3P58872 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC21.3■■□□□ 1
RHBDL3P58872 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
RHBDL3P58872 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
RHBDL3P58872 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.3■■□□□ 1
RHBDL3P58872 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RHBDL3P58872 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RHBDL3P58872 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC21.3■■□□□ 1
RHBDL3P58872 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.3■■□□□ 1
RHBDL3P58872 AC139887.3-201ENST00000568585 713 ntBASIC21.3■■□□□ 1
RHBDL3P58872 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC21.3■■□□□ 1
RHBDL3P58872 PRKN-208ENST00000610470 531 ntTSL 2 BASIC21.3■■□□□ 1
RHBDL3P58872 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC21.3■■□□□ 1
RHBDL3P58872 PRKN-209ENST00000612485 225 ntTSL 5 BASIC21.3■■□□□ 1
RHBDL3P58872 AC116407.3-201ENST00000623905 1129 ntBASIC21.3■■□□□ 1
RHBDL3P58872 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC21.3■■□□□ 1
RHBDL3P58872 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RHBDL3P58872 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RHBDL3P58872 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RHBDL3P58872 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.3■■□□□ 1
RHBDL3P58872 AL096828.2-201ENST00000567259 1965 ntBASIC21.3■■□□□ 1
RHBDL3P58872 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.3■■□□□ 1
RHBDL3P58872 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
RHBDL3P58872 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
RHBDL3P58872 AC018445.3-201ENST00000624177 1945 ntBASIC21.29■■□□□ 1
RHBDL3P58872 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.29■■□□□ 1
RHBDL3P58872 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RHBDL3P58872 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RHBDL3P58872 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RHBDL3P58872 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC21.29■■□□□ 1
RHBDL3P58872 RPS2P1-201ENST00000434010 821 ntBASIC21.29■■□□□ 1
RHBDL3P58872 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
RHBDL3P58872 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC21.29■■□□□ 1
RHBDL3P58872 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC21.29■■□□□ 1
RHBDL3P58872 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RHBDL3P58872 RPL18-209ENST00000550645 463 ntTSL 5 BASIC21.29■■□□□ 1
RHBDL3P58872 RPL18-214ENST00000552588 559 ntTSL 3 BASIC21.29■■□□□ 1
RHBDL3P58872 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.29■■□□□ 1
RHBDL3P58872 NKAPP1-205ENST00000585790 367 ntBASIC21.29■■□□□ 1
RHBDL3P58872 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
RHBDL3P58872 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC21.29■■□□□ 1
RHBDL3P58872 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
RHBDL3P58872 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC21.29■■□□□ 1
RHBDL3P58872 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
RHBDL3P58872 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
RHBDL3P58872 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.29■■□□□ 1
RHBDL3P58872 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC21.29■■□□□ 1
RHBDL3P58872 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
RHBDL3P58872 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RHBDL3P58872 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC21.28■■□□□ 1
RHBDL3P58872 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RHBDL3P58872 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.28■■□□□ 1
RHBDL3P58872 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RHBDL3P58872 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21.28■■□□□ 1
RHBDL3P58872 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.28■■□□□ 1
RHBDL3P58872 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.28■■□□□ 1
RHBDL3P58872 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms