Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Col18a1P39061 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC31.57■■■□□ 2.64
Col18a1P39061 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
Col18a1P39061 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC31.57■■■□□ 2.64
Col18a1P39061 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC31.56■■■□□ 2.64
Col18a1P39061 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
Col18a1P39061 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Col18a1P39061 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC31.56■■■□□ 2.64
Col18a1P39061 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Col18a1P39061 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Col18a1P39061 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC31.55■■■□□ 2.64
Col18a1P39061 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Col18a1P39061 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC31.54■■■□□ 2.64
Col18a1P39061 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC31.54■■■□□ 2.64
Col18a1P39061 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
Col18a1P39061 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC31.53■■■□□ 2.64
Col18a1P39061 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
Col18a1P39061 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
Col18a1P39061 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC31.51■■■□□ 2.63
Col18a1P39061 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Col18a1P39061 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
Col18a1P39061 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
Col18a1P39061 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Col18a1P39061 Serp2-204ENSMUST00000228055 705 ntBASIC31.49■■■□□ 2.63
Col18a1P39061 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Col18a1P39061 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
Col18a1P39061 Ncoa7-206ENSMUST00000215725 1445 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
Col18a1P39061 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Col18a1P39061 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC31.48■■■□□ 2.63
Col18a1P39061 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
Col18a1P39061 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Col18a1P39061 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC31.48■■■□□ 2.63
Col18a1P39061 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC31.47■■■□□ 2.63
Col18a1P39061 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC31.47■■■□□ 2.63
Col18a1P39061 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
Col18a1P39061 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC31.46■■■□□ 2.63
Col18a1P39061 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
Col18a1P39061 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
Col18a1P39061 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC31.44■■■□□ 2.62
Col18a1P39061 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC31.44■■■□□ 2.62
Col18a1P39061 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC31.43■■■□□ 2.62
Col18a1P39061 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Col18a1P39061 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
Col18a1P39061 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC31.42■■■□□ 2.62
Col18a1P39061 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
Col18a1P39061 Gm10232-201ENSMUST00000089221 720 ntBASIC31.42■■■□□ 2.62
Col18a1P39061 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
Col18a1P39061 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC31.41■■■□□ 2.62
Col18a1P39061 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Col18a1P39061 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
Col18a1P39061 Gm43445-201ENSMUST00000198564 2091 ntBASIC31.41■■■□□ 2.62
Col18a1P39061 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
Col18a1P39061 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC31.38■■■□□ 2.61
Col18a1P39061 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Col18a1P39061 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Col18a1P39061 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Col18a1P39061 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Col18a1P39061 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Col18a1P39061 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
Col18a1P39061 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC31.37■■■□□ 2.61
Col18a1P39061 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
Col18a1P39061 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC31.36■■■□□ 2.61
Col18a1P39061 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC31.36■■■□□ 2.61
Col18a1P39061 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Col18a1P39061 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
Col18a1P39061 Gm37847-201ENSMUST00000192163 1497 ntBASIC31.34■■■□□ 2.61
Col18a1P39061 Gm31748-201ENSMUST00000194938 1497 ntBASIC31.34■■■□□ 2.61
Col18a1P39061 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC31.34■■■□□ 2.61
Col18a1P39061 Gm5131-201ENSMUST00000212776 1238 ntBASIC31.34■■■□□ 2.61
Col18a1P39061 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC31.34■■■□□ 2.61
Col18a1P39061 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Col18a1P39061 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Col18a1P39061 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC31.33■■■□□ 2.61
Col18a1P39061 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC31.33■■■□□ 2.61
Col18a1P39061 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
Col18a1P39061 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Col18a1P39061 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
Col18a1P39061 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Col18a1P39061 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Col18a1P39061 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC31.3■■■□□ 2.6
Col18a1P39061 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Col18a1P39061 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC31.3■■■□□ 2.6
Col18a1P39061 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
Col18a1P39061 AC117769.4-201ENSMUST00000225679 685 ntBASIC31.3■■■□□ 2.6
Col18a1P39061 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Col18a1P39061 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
Col18a1P39061 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC31.29■■■□□ 2.6
Col18a1P39061 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
Col18a1P39061 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC31.28■■■□□ 2.6
Col18a1P39061 Gm21956-201ENSMUST00000179946 522 ntBASIC31.28■■■□□ 2.6
Col18a1P39061 Etf1-202ENSMUST00000180351 108 ntBASIC31.28■■■□□ 2.6
Col18a1P39061 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC31.28■■■□□ 2.6
Col18a1P39061 Gm4419-202ENSMUST00000226239 1431 ntBASIC31.27■■■□□ 2.6
Col18a1P39061 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC31.27■■■□□ 2.6
Col18a1P39061 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC31.27■■■□□ 2.6
Col18a1P39061 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
Col18a1P39061 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC31.26■■■□□ 2.6
Col18a1P39061 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC31.26■■■□□ 2.6
Col18a1P39061 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC31.26■■■□□ 2.59
Col18a1P39061 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms