Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 MTDHP3-201ENST00000594186 672 ntBASIC17.62■□□□□ 0.41
LMX1AQ8TE12 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 BX640515.1-201ENST00000617215 977 ntBASIC17.62■□□□□ 0.41
LMX1AQ8TE12 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 AC125634.1-201ENST00000438758 1403 ntBASIC17.62■□□□□ 0.41
LMX1AQ8TE12 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
LMX1AQ8TE12 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.61■□□□□ 0.41
LMX1AQ8TE12 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 AL031284.1-201ENST00000419297 478 ntBASIC17.61■□□□□ 0.41
LMX1AQ8TE12 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 AL355877.3-201ENST00000622820 899 ntBASIC17.61■□□□□ 0.41
LMX1AQ8TE12 AC148477.8-201ENST00000624298 468 ntBASIC17.61■□□□□ 0.41
LMX1AQ8TE12 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
LMX1AQ8TE12 INTS4P1-201ENST00000438455 1935 ntBASIC17.6■□□□□ 0.41
LMX1AQ8TE12 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 TEX30-205ENST00000376029 959 ntTSL 2 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.6■□□□□ 0.41
LMX1AQ8TE12 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 AC112698.1-201ENST00000510299 916 ntBASIC17.6■□□□□ 0.41
LMX1AQ8TE12 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 AC011467.2-201ENST00000598425 242 ntBASIC17.6■□□□□ 0.41
LMX1AQ8TE12 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LMX1AQ8TE12 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.59■□□□□ 0.41
LMX1AQ8TE12 RBM17P3-201ENST00000417687 1192 ntBASIC17.59■□□□□ 0.41
LMX1AQ8TE12 AC093909.1-201ENST00000504731 1122 ntBASIC17.59■□□□□ 0.41
LMX1AQ8TE12 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms