Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC24.02■■□□□ 1.44
USP54Q70EL1 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC24.02■■□□□ 1.44
USP54Q70EL1 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP54Q70EL1 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC24.01■■□□□ 1.43
USP54Q70EL1 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
USP54Q70EL1 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP54Q70EL1 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
USP54Q70EL1 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC24.01■■□□□ 1.43
USP54Q70EL1 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP54Q70EL1 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP54Q70EL1 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP54Q70EL1 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
USP54Q70EL1 ALG1L5P-201ENST00000482043 771 ntBASIC24.01■■□□□ 1.43
USP54Q70EL1 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
USP54Q70EL1 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC24.01■■□□□ 1.43
USP54Q70EL1 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
USP54Q70EL1 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
USP54Q70EL1 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC24.01■■□□□ 1.43
USP54Q70EL1 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC24■■□□□ 1.43
USP54Q70EL1 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC24■■□□□ 1.43
USP54Q70EL1 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC24■■□□□ 1.43
USP54Q70EL1 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC24■■□□□ 1.43
USP54Q70EL1 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC24■■□□□ 1.43
USP54Q70EL1 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC24■■□□□ 1.43
USP54Q70EL1 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC24■■□□□ 1.43
USP54Q70EL1 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC24■■□□□ 1.43
USP54Q70EL1 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC24■■□□□ 1.43
USP54Q70EL1 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC24■■□□□ 1.43
USP54Q70EL1 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
USP54Q70EL1 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC24■■□□□ 1.43
USP54Q70EL1 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC24■■□□□ 1.43
USP54Q70EL1 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
USP54Q70EL1 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC24■■□□□ 1.43
USP54Q70EL1 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC24■■□□□ 1.43
USP54Q70EL1 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP54Q70EL1 PRYP5-201ENST00000451909 266 ntBASIC23.99■■□□□ 1.43
USP54Q70EL1 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC23.99■■□□□ 1.43
USP54Q70EL1 RIN3-211ENST00000557762 517 ntTSL 3 BASIC23.99■■□□□ 1.43
USP54Q70EL1 AC055717.3-201ENST00000622967 595 ntBASIC23.99■■□□□ 1.43
USP54Q70EL1 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC23.99■■□□□ 1.43
USP54Q70EL1 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
USP54Q70EL1 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP54Q70EL1 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
USP54Q70EL1 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
USP54Q70EL1 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC23.99■■□□□ 1.43
USP54Q70EL1 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP54Q70EL1 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
USP54Q70EL1 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC23.99■■□□□ 1.43
USP54Q70EL1 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC23.99■■□□□ 1.43
USP54Q70EL1 AC108073.2-201ENST00000464002 357 ntBASIC23.99■■□□□ 1.43
USP54Q70EL1 AC092183.1-201ENST00000469884 875 ntBASIC23.99■■□□□ 1.43
USP54Q70EL1 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC23.99■■□□□ 1.43
USP54Q70EL1 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
USP54Q70EL1 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
USP54Q70EL1 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC23.98■■□□□ 1.43
USP54Q70EL1 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC23.98■■□□□ 1.43
USP54Q70EL1 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC23.98■■□□□ 1.43
USP54Q70EL1 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
USP54Q70EL1 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
USP54Q70EL1 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC23.98■■□□□ 1.43
USP54Q70EL1 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
USP54Q70EL1 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC23.98■■□□□ 1.43
USP54Q70EL1 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC23.98■■□□□ 1.43
USP54Q70EL1 MIR1199-201ENST00000621445 119 ntBASIC23.98■■□□□ 1.43
USP54Q70EL1 AC073592.5-201ENST00000624854 528 ntBASIC23.98■■□□□ 1.43
USP54Q70EL1 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC23.98■■□□□ 1.43
USP54Q70EL1 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
USP54Q70EL1 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
USP54Q70EL1 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP54Q70EL1 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
USP54Q70EL1 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
USP54Q70EL1 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP54Q70EL1 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC23.97■■□□□ 1.43
USP54Q70EL1 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP54Q70EL1 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP54Q70EL1 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC23.97■■□□□ 1.43
USP54Q70EL1 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
USP54Q70EL1 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC23.97■■□□□ 1.43
USP54Q70EL1 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC23.97■■□□□ 1.43
USP54Q70EL1 KRT18P3-201ENST00000451602 1288 ntBASIC23.97■■□□□ 1.43
USP54Q70EL1 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC23.97■■□□□ 1.43
USP54Q70EL1 RNA5SP416-201ENST00000516838 111 ntBASIC23.97■■□□□ 1.43
USP54Q70EL1 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC23.97■■□□□ 1.43
USP54Q70EL1 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
USP54Q70EL1 AC002347.1-201ENST00000569543 541 ntBASIC23.97■■□□□ 1.43
USP54Q70EL1 PGM5P2-202ENST00000637225 1043 ntBASIC23.97■■□□□ 1.43
USP54Q70EL1 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP54Q70EL1 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP54Q70EL1 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP54Q70EL1 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
USP54Q70EL1 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP54Q70EL1 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP54Q70EL1 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
USP54Q70EL1 AC002310.6-201ENST00000624451 1377 ntBASIC23.96■■□□□ 1.43
USP54Q70EL1 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP54Q70EL1 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP54Q70EL1 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP54Q70EL1 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC23.96■■□□□ 1.43
USP54Q70EL1 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC23.96■■□□□ 1.43
USP54Q70EL1 AC005104.2-201ENST00000427818 678 ntBASIC23.96■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms