Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.4■□□□□ 0.38
COL28A1Q2UY09 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 DNAJB3-201ENST00000446806 729 ntBASIC17.4■□□□□ 0.38
COL28A1Q2UY09 DNAJB3-202ENST00000449667 1266 ntBASIC17.4■□□□□ 0.38
COL28A1Q2UY09 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 HLA-J-203ENST00000494367 1087 ntBASIC17.4■□□□□ 0.38
COL28A1Q2UY09 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL28A1Q2UY09 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.38
COL28A1Q2UY09 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL28A1Q2UY09 AC120498.9-201ENST00000339021 3867 ntBASIC17.39■□□□□ 0.37
COL28A1Q2UY09 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 GUSBP12-201ENST00000513727 720 ntBASIC17.39■□□□□ 0.37
COL28A1Q2UY09 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 AL355877.3-201ENST00000622820 899 ntBASIC17.39■□□□□ 0.37
COL28A1Q2UY09 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 KRT18P28-201ENST00000453838 1332 ntBASIC17.39■□□□□ 0.37
COL28A1Q2UY09 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL28A1Q2UY09 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 AL161938.1-201ENST00000569833 2180 ntBASIC17.38■□□□□ 0.37
COL28A1Q2UY09 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.38■□□□□ 0.37
COL28A1Q2UY09 AL023284.2-201ENST00000405850 579 ntBASIC17.38■□□□□ 0.37
COL28A1Q2UY09 FAM8A3P-201ENST00000427218 844 ntBASIC17.38■□□□□ 0.37
COL28A1Q2UY09 CYMP-203ENST00000474680 1263 ntBASIC17.38■□□□□ 0.37
COL28A1Q2UY09 AC091607.1-201ENST00000490318 1060 ntBASIC17.38■□□□□ 0.37
COL28A1Q2UY09 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 AC145285.3-201ENST00000564603 959 ntBASIC17.38■□□□□ 0.37
COL28A1Q2UY09 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 MIR3180-5-201ENST00000583743 153 ntBASIC17.38■□□□□ 0.37
COL28A1Q2UY09 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.38■□□□□ 0.37
COL28A1Q2UY09 FP475955.4-201ENST00000623131 1990 ntBASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms