Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.98■□□□□ 0.47
CXCL12P48061 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC17.98■□□□□ 0.47
CXCL12P48061 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CXCL12P48061 PMPCAP1-201ENST00000508114 1576 ntBASIC17.98■□□□□ 0.47
CXCL12P48061 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.98■□□□□ 0.47
CXCL12P48061 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CXCL12P48061 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.98■□□□□ 0.47
CXCL12P48061 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC17.98■□□□□ 0.47
CXCL12P48061 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CXCL12P48061 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CXCL12P48061 USP48-205ENST00000421625 2818 ntTSL 2 BASIC17.98■□□□□ 0.47
CXCL12P48061 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.98■□□□□ 0.47
CXCL12P48061 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CXCL12P48061 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CXCL12P48061 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CXCL12P48061 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.97■□□□□ 0.47
CXCL12P48061 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
CXCL12P48061 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
CXCL12P48061 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.97■□□□□ 0.47
CXCL12P48061 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.97■□□□□ 0.47
CXCL12P48061 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.97■□□□□ 0.47
CXCL12P48061 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
CXCL12P48061 CYMP-203ENST00000474680 1263 ntBASIC17.97■□□□□ 0.47
CXCL12P48061 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.97■□□□□ 0.47
CXCL12P48061 YBX1P5-201ENST00000509441 847 ntBASIC17.97■□□□□ 0.47
CXCL12P48061 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CXCL12P48061 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.97■□□□□ 0.47
CXCL12P48061 MIR4469-201ENST00000583919 79 ntBASIC17.97■□□□□ 0.47
CXCL12P48061 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC17.97■□□□□ 0.47
CXCL12P48061 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.97■□□□□ 0.47
CXCL12P48061 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.97■□□□□ 0.47
CXCL12P48061 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.97■□□□□ 0.47
CXCL12P48061 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.97■□□□□ 0.47
CXCL12P48061 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.97■□□□□ 0.47
CXCL12P48061 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CXCL12P48061 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL12P48061 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL12P48061 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL12P48061 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CXCL12P48061 AC002310.6-201ENST00000624451 1377 ntBASIC17.96■□□□□ 0.47
CXCL12P48061 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL12P48061 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL12P48061 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL12P48061 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.96■□□□□ 0.47
CXCL12P48061 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.96■□□□□ 0.47
CXCL12P48061 AC254562.1-201ENST00000417586 456 ntBASIC17.96■□□□□ 0.47
CXCL12P48061 RFPL4AP1-201ENST00000530883 850 ntBASIC17.96■□□□□ 0.47
CXCL12P48061 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
CXCL12P48061 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
CXCL12P48061 AC073592.4-201ENST00000623827 446 ntBASIC17.96■□□□□ 0.47
CXCL12P48061 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL12P48061 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL12P48061 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL12P48061 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CXCL12P48061 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
CXCL12P48061 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL12P48061 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CXCL12P48061 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL12P48061 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CXCL12P48061 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CXCL12P48061 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC17.95■□□□□ 0.46
CXCL12P48061 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL12P48061 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
CXCL12P48061 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.95■□□□□ 0.46
CXCL12P48061 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.95■□□□□ 0.46
CXCL12P48061 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
CXCL12P48061 CRYGEP-201ENST00000412192 528 ntBASIC17.95■□□□□ 0.46
CXCL12P48061 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC17.95■□□□□ 0.46
CXCL12P48061 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.95■□□□□ 0.46
CXCL12P48061 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.95■□□□□ 0.46
CXCL12P48061 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.95■□□□□ 0.46
CXCL12P48061 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL12P48061 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CXCL12P48061 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL12P48061 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL12P48061 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL12P48061 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL12P48061 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC17.95■□□□□ 0.46
CXCL12P48061 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL12P48061 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL12P48061 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.95■□□□□ 0.46
CXCL12P48061 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.95■□□□□ 0.46
CXCL12P48061 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL12P48061 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CXCL12P48061 AC004817.3-201ENST00000602957 2129 ntBASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms