Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC21.91■■□□□ 1.1
BRCA1P38398 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.91■■□□□ 1.1
BRCA1P38398 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.91■■□□□ 1.1
BRCA1P38398 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
BRCA1P38398 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 MIR661-201ENST00000384842 89 ntBASIC21.91■■□□□ 1.1
BRCA1P38398 METTL26-204ENST00000397665 558 ntTSL 2 BASIC21.91■■□□□ 1.1
BRCA1P38398 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC21.91■■□□□ 1.1
BRCA1P38398 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.91■■□□□ 1.1
BRCA1P38398 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.91■■□□□ 1.1
BRCA1P38398 LINC01006-201ENST00000333319 2292 ntBASIC21.91■■□□□ 1.1
BRCA1P38398 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 AC132938.6-201ENST00000623828 1655 ntBASIC21.91■■□□□ 1.1
BRCA1P38398 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
BRCA1P38398 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
BRCA1P38398 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
BRCA1P38398 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
BRCA1P38398 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.9■■□□□ 1.1
BRCA1P38398 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
BRCA1P38398 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
BRCA1P38398 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
BRCA1P38398 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
BRCA1P38398 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
BRCA1P38398 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
BRCA1P38398 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
BRCA1P38398 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
BRCA1P38398 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
BRCA1P38398 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC21.9■■□□□ 1.1
BRCA1P38398 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
BRCA1P38398 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
BRCA1P38398 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC21.9■■□□□ 1.1
BRCA1P38398 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC21.9■■□□□ 1.1
BRCA1P38398 AC012645.4-201ENST00000610691 1061 ntBASIC21.9■■□□□ 1.1
BRCA1P38398 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
BRCA1P38398 AC073592.5-201ENST00000624854 528 ntBASIC21.9■■□□□ 1.1
BRCA1P38398 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
BRCA1P38398 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.89■■□□□ 1.1
BRCA1P38398 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
BRCA1P38398 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.89■■□□□ 1.09
BRCA1P38398 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
BRCA1P38398 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
BRCA1P38398 PMS2P4-201ENST00000412466 1052 ntBASIC21.89■■□□□ 1.09
BRCA1P38398 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC21.89■■□□□ 1.09
BRCA1P38398 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC21.89■■□□□ 1.09
BRCA1P38398 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
BRCA1P38398 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC21.89■■□□□ 1.09
BRCA1P38398 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC21.89■■□□□ 1.09
BRCA1P38398 AC190387.1-201ENST00000551683 408 ntBASIC21.89■■□□□ 1.09
BRCA1P38398 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
BRCA1P38398 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
BRCA1P38398 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
BRCA1P38398 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
BRCA1P38398 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
BRCA1P38398 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.88■■□□□ 1.09
BRCA1P38398 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
BRCA1P38398 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.88■■□□□ 1.09
BRCA1P38398 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
BRCA1P38398 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
BRCA1P38398 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC21.88■■□□□ 1.09
BRCA1P38398 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC21.88■■□□□ 1.09
BRCA1P38398 SIGLEC30P-201ENST00000455569 941 ntBASIC21.88■■□□□ 1.09
BRCA1P38398 MEIS3P1-201ENST00000495167 958 ntBASIC21.88■■□□□ 1.09
BRCA1P38398 CYB561-217ENST00000582997 877 ntTSL 5 BASIC21.88■■□□□ 1.09
BRCA1P38398 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
BRCA1P38398 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC21.88■■□□□ 1.09
BRCA1P38398 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
BRCA1P38398 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
BRCA1P38398 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
BRCA1P38398 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
BRCA1P38398 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC21.88■■□□□ 1.09
BRCA1P38398 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC21.88■■□□□ 1.09
BRCA1P38398 AF228730.6-201ENST00000641497 218 ntBASIC21.88■■□□□ 1.09
BRCA1P38398 AC084121.3-201ENST00000641716 218 ntBASIC21.88■■□□□ 1.09
BRCA1P38398 AC105233.6-201ENST00000642093 218 ntBASIC21.88■■□□□ 1.09
BRCA1P38398 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC21.87■■□□□ 1.09
BRCA1P38398 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
BRCA1P38398 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC21.87■■□□□ 1.09
BRCA1P38398 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
BRCA1P38398 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
BRCA1P38398 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
BRCA1P38398 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.87■■□□□ 1.09
BRCA1P38398 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
BRCA1P38398 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
BRCA1P38398 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
BRCA1P38398 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC21.87■■□□□ 1.09
BRCA1P38398 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC21.87■■□□□ 1.09
BRCA1P38398 AC092474.2-201ENST00000424288 719 ntBASIC21.87■■□□□ 1.09
BRCA1P38398 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC21.87■■□□□ 1.09
BRCA1P38398 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC21.87■■□□□ 1.09
BRCA1P38398 AC015911.4-201ENST00000588022 1070 ntBASIC21.87■■□□□ 1.09
BRCA1P38398 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
BRCA1P38398 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms