Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCA1P28370 AC096633.1-201ENST00000422446 749 ntBASIC20.76■□□□□ 0.91
SMARCA1P28370 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCA1P28370 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC20.76■□□□□ 0.91
SMARCA1P28370 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCA1P28370 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
SMARCA1P28370 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.76■□□□□ 0.91
SMARCA1P28370 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
SMARCA1P28370 AC005336.2-201ENST00000593183 939 ntBASIC20.76■□□□□ 0.91
SMARCA1P28370 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.76■□□□□ 0.91
SMARCA1P28370 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCA1P28370 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
SMARCA1P28370 AC125634.1-201ENST00000438758 1403 ntBASIC20.76■□□□□ 0.91
SMARCA1P28370 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.76■□□□□ 0.91
SMARCA1P28370 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC20.76■□□□□ 0.91
SMARCA1P28370 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCA1P28370 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
SMARCA1P28370 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SMARCA1P28370 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCA1P28370 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCA1P28370 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.76■□□□□ 0.91
SMARCA1P28370 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
SMARCA1P28370 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SMARCA1P28370 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC20.76■□□□□ 0.91
SMARCA1P28370 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
SMARCA1P28370 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
SMARCA1P28370 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCA1P28370 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCA1P28370 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCA1P28370 KRT18P55-202ENST00000578578 1546 ntBASIC20.75■□□□□ 0.91
SMARCA1P28370 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCA1P28370 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SMARCA1P28370 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCA1P28370 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCA1P28370 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCA1P28370 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCA1P28370 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCA1P28370 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
SMARCA1P28370 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.75■□□□□ 0.91
SMARCA1P28370 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC20.75■□□□□ 0.91
SMARCA1P28370 DANCR-204ENST00000444958 709 ntTSL 3 BASIC20.75■□□□□ 0.91
SMARCA1P28370 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SMARCA1P28370 KRT18P56-201ENST00000507275 550 ntBASIC20.75■□□□□ 0.91
SMARCA1P28370 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.75■□□□□ 0.91
SMARCA1P28370 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.75■□□□□ 0.91
SMARCA1P28370 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC20.75■□□□□ 0.91
SMARCA1P28370 MIR3652-201ENST00000579335 131 ntBASIC20.75■□□□□ 0.91
SMARCA1P28370 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC20.75■□□□□ 0.91
SMARCA1P28370 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SMARCA1P28370 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCA1P28370 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.75■□□□□ 0.91
SMARCA1P28370 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCA1P28370 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.75■□□□□ 0.91
SMARCA1P28370 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
SMARCA1P28370 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCA1P28370 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SMARCA1P28370 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.74■□□□□ 0.91
SMARCA1P28370 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.74■□□□□ 0.91
SMARCA1P28370 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCA1P28370 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.74■□□□□ 0.91
SMARCA1P28370 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.74■□□□□ 0.91
SMARCA1P28370 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCA1P28370 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCA1P28370 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SMARCA1P28370 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCA1P28370 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
SMARCA1P28370 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.74■□□□□ 0.91
SMARCA1P28370 SLC25A6P5-201ENST00000435663 894 ntBASIC20.74■□□□□ 0.91
SMARCA1P28370 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCA1P28370 AC104819.1-201ENST00000504587 486 ntBASIC20.74■□□□□ 0.91
SMARCA1P28370 AP000867.3-201ENST00000524675 377 ntBASIC20.74■□□□□ 0.91
SMARCA1P28370 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.74■□□□□ 0.91
SMARCA1P28370 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
SMARCA1P28370 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.74■□□□□ 0.91
SMARCA1P28370 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.74■□□□□ 0.91
SMARCA1P28370 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC20.74■□□□□ 0.91
SMARCA1P28370 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCA1P28370 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC20.74■□□□□ 0.91
SMARCA1P28370 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCA1P28370 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SMARCA1P28370 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SMARCA1P28370 KRT8P47-201ENST00000604727 1398 ntBASIC20.73■□□□□ 0.91
SMARCA1P28370 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCA1P28370 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.73■□□□□ 0.91
SMARCA1P28370 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCA1P28370 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC20.73■□□□□ 0.91
SMARCA1P28370 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCA1P28370 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCA1P28370 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
SMARCA1P28370 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
SMARCA1P28370 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.73■□□□□ 0.91
SMARCA1P28370 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCA1P28370 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCA1P28370 POM121L3P-201ENST00000419331 1163 ntBASIC20.73■□□□□ 0.91
SMARCA1P28370 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.73■□□□□ 0.91
SMARCA1P28370 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.73■□□□□ 0.91
SMARCA1P28370 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.73■□□□□ 0.91
SMARCA1P28370 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.73■□□□□ 0.91
SMARCA1P28370 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SMARCA1P28370 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms