Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HLA-DMBP28068 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HLA-DMBP28068 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 CA15P1-201ENST00000481698 905 ntBASIC13.84□□□□□ -0.19
HLA-DMBP28068 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HLA-DMBP28068 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 AP003041.3-201ENST00000527151 707 ntBASIC13.84□□□□□ -0.19
HLA-DMBP28068 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 GRAMD4P8-201ENST00000605465 1115 ntBASIC13.84□□□□□ -0.19
HLA-DMBP28068 GLDC-219ENST00000640208 420 ntTSL 2 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
HLA-DMBP28068 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HLA-DMBP28068 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 FLJ13224-201ENST00000313737 1514 ntBASIC13.84□□□□□ -0.19
HLA-DMBP28068 AL163051.1-201ENST00000569214 1512 ntBASIC13.84□□□□□ -0.19
HLA-DMBP28068 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HLA-DMBP28068 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC13.84□□□□□ -0.19
HLA-DMBP28068 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HLA-DMBP28068 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HLA-DMBP28068 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HLA-DMBP28068 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC13.83□□□□□ -0.19
HLA-DMBP28068 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HLA-DMBP28068 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
HLA-DMBP28068 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
HLA-DMBP28068 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HLA-DMBP28068 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC13.83□□□□□ -0.19
HLA-DMBP28068 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
HLA-DMBP28068 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HLA-DMBP28068 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HLA-DMBP28068 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HLA-DMBP28068 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC13.83□□□□□ -0.19
HLA-DMBP28068 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.19
HLA-DMBP28068 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 AC009102.3-201ENST00000623118 1491 ntBASIC13.83□□□□□ -0.2
HLA-DMBP28068 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 SNCG-201ENST00000348795 684 ntTSL 2 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 HIST1H2APS4-201ENST00000362070 348 ntBASIC13.83□□□□□ -0.2
HLA-DMBP28068 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 AL390955.1-201ENST00000428694 934 ntBASIC13.83□□□□□ -0.2
HLA-DMBP28068 KRT18P23-201ENST00000435622 1283 ntBASIC13.83□□□□□ -0.2
HLA-DMBP28068 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 KRT18P21-201ENST00000515767 1272 ntBASIC13.83□□□□□ -0.2
HLA-DMBP28068 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 CYP51A1P1-201ENST00000492267 1507 ntBASIC13.83□□□□□ -0.2
HLA-DMBP28068 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HLA-DMBP28068 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC13.83□□□□□ -0.2
HLA-DMBP28068 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 SP100-208ENST00000427101 1922 ntTSL 2 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 GNE-204ENST00000539208 2190 ntTSL 2 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
HLA-DMBP28068 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HLA-DMBP28068 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms