Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
TRIM49D1C9J1S8 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
TRIM49D1C9J1S8 KRT18P23-201ENST00000435622 1283 ntBASIC18.19■□□□□ 0.5
TRIM49D1C9J1S8 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.19■□□□□ 0.5
TRIM49D1C9J1S8 NUDT16P1-203ENST00000513809 620 ntBASIC18.19■□□□□ 0.5
TRIM49D1C9J1S8 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.19■□□□□ 0.5
TRIM49D1C9J1S8 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.19■□□□□ 0.5
TRIM49D1C9J1S8 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM49D1C9J1S8 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM49D1C9J1S8 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
TRIM49D1C9J1S8 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
TRIM49D1C9J1S8 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.19■□□□□ 0.5
TRIM49D1C9J1S8 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.19■□□□□ 0.5
TRIM49D1C9J1S8 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
TRIM49D1C9J1S8 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 AL135905.2-201ENST00000584934 1404 ntBASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 CRYGFP-201ENST00000418459 633 ntBASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 CD99P1-205ENST00000527459 561 ntBASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 AC099398.1-201ENST00000567919 2776 ntBASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.18■□□□□ 0.5
TRIM49D1C9J1S8 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
TRIM49D1C9J1S8 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM49D1C9J1S8 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms