Protein–RNA interactions for Protein: Q9UQE7

SMC3, Structural maintenance of chromosomes protein 3, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC3Q9UQE7 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMC3Q9UQE7 AL390955.1-201ENST00000428694 934 ntBASIC21.33■■□□□ 1.01
SMC3Q9UQE7 AC112497.1-201ENST00000624824 639 ntBASIC21.33■■□□□ 1.01
SMC3Q9UQE7 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
SMC3Q9UQE7 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.33■■□□□ 1.01
SMC3Q9UQE7 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC21.33■■□□□ 1
SMC3Q9UQE7 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SMC3Q9UQE7 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC21.33■■□□□ 1
SMC3Q9UQE7 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.33■■□□□ 1
SMC3Q9UQE7 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SMC3Q9UQE7 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
SMC3Q9UQE7 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
SMC3Q9UQE7 NME9-203ENST00000383180 2133 ntTSL 2 BASIC21.32■■□□□ 1
SMC3Q9UQE7 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 AC006116.8-202ENST00000587620 1550 ntBASIC21.32■■□□□ 1
SMC3Q9UQE7 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC21.32■■□□□ 1
SMC3Q9UQE7 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.32■■□□□ 1
SMC3Q9UQE7 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC21.32■■□□□ 1
SMC3Q9UQE7 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.32■■□□□ 1
SMC3Q9UQE7 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.32■■□□□ 1
SMC3Q9UQE7 AC104390.1-201ENST00000555663 520 ntBASIC21.32■■□□□ 1
SMC3Q9UQE7 FITM1-202ENST00000559294 800 ntBASIC21.32■■□□□ 1
SMC3Q9UQE7 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.32■■□□□ 1
SMC3Q9UQE7 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.32■■□□□ 1
SMC3Q9UQE7 AC116562.4-202ENST00000641738 218 ntBASIC21.32■■□□□ 1
SMC3Q9UQE7 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC21.32■■□□□ 1
SMC3Q9UQE7 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC21.32■■□□□ 1
SMC3Q9UQE7 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC21.32■■□□□ 1
SMC3Q9UQE7 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SMC3Q9UQE7 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC21.31■■□□□ 1
SMC3Q9UQE7 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.31■■□□□ 1
SMC3Q9UQE7 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC3Q9UQE7 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
SMC3Q9UQE7 ASL-204ENST00000395331 1538 ntTSL 5 BASIC21.31■■□□□ 1
SMC3Q9UQE7 KRT18P55-202ENST00000578578 1546 ntBASIC21.31■■□□□ 1
SMC3Q9UQE7 AL024508.2-201ENST00000607749 1894 ntBASIC21.31■■□□□ 1
SMC3Q9UQE7 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC3Q9UQE7 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC21.31■■□□□ 1
SMC3Q9UQE7 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC3Q9UQE7 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC3Q9UQE7 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.31■■□□□ 1
SMC3Q9UQE7 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC3Q9UQE7 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.31■■□□□ 1
SMC3Q9UQE7 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC3Q9UQE7 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.31■■□□□ 1
SMC3Q9UQE7 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC3Q9UQE7 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC21.31■■□□□ 1
SMC3Q9UQE7 AC007663.1-201ENST00000438948 1240 ntBASIC21.31■■□□□ 1
SMC3Q9UQE7 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.31■■□□□ 1
SMC3Q9UQE7 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC21.31■■□□□ 1
SMC3Q9UQE7 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC21.31■■□□□ 1
SMC3Q9UQE7 AC008550.1-201ENST00000511500 884 ntBASIC21.31■■□□□ 1
SMC3Q9UQE7 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.31■■□□□ 1
SMC3Q9UQE7 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.31■■□□□ 1
SMC3Q9UQE7 MIR4785-201ENST00000585005 73 ntBASIC21.31■■□□□ 1
SMC3Q9UQE7 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.31■■□□□ 1
SMC3Q9UQE7 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC21.31■■□□□ 1
SMC3Q9UQE7 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC3Q9UQE7 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC3Q9UQE7 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC3Q9UQE7 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC3Q9UQE7 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SMC3Q9UQE7 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
SMC3Q9UQE7 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SMC3Q9UQE7 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC21.3■■□□□ 1
SMC3Q9UQE7 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMC3Q9UQE7 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC21.3■■□□□ 1
SMC3Q9UQE7 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SMC3Q9UQE7 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMC3Q9UQE7 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
SMC3Q9UQE7 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC21.3■■□□□ 1
SMC3Q9UQE7 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.3■■□□□ 1
SMC3Q9UQE7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
SMC3Q9UQE7 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
SMC3Q9UQE7 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMC3Q9UQE7 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.3■■□□□ 1
SMC3Q9UQE7 MIR718-201ENST00000390190 70 ntBASIC21.3■■□□□ 1
SMC3Q9UQE7 PHB2-202ENST00000440277 996 ntTSL 5 BASIC21.3■■□□□ 1
SMC3Q9UQE7 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
SMC3Q9UQE7 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.3■■□□□ 1
SMC3Q9UQE7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SMC3Q9UQE7 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.3■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms