Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC005336.2-201ENST00000593183 939 ntBASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 FAM197Y3-203ENST00000618346 717 ntBASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.89■□□□□ 0.61
LIMD1Q9UGP4 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 RPSAP43-201ENST00000402237 625 ntBASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 AC027796.2-201ENST00000575326 344 ntBASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LIMD1Q9UGP4 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 RPS2P1-201ENST00000434010 821 ntBASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 AC092910.1-201ENST00000482027 1129 ntBASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 AC112482.1-201ENST00000492080 688 ntBASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 AC112777.1-201ENST00000540175 1423 ntBASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 AP001160.2-201ENST00000596071 487 ntBASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LIMD1Q9UGP4 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 TNXA-203ENST00000507684 2038 ntBASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 AL163051.1-201ENST00000569214 1512 ntBASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 AC068472.1-201ENST00000474589 881 ntBASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 AC034105.1-201ENST00000563488 319 ntBASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 MIR3687-2-201ENST00000577708 61 ntBASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 MIR3687-1-201ENST00000614492 61 ntBASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LIMD1Q9UGP4 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms