Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 HCG4P8-203ENST00000443049 980 ntBASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 AC093458.2-201ENST00000623150 629 ntBASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.56■□□□□ 0.4
CUEDC1Q9NWM3 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 AL162741.1-201ENST00000565563 1558 ntBASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CUEDC1Q9NWM3 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 ZNF444P1-201ENST00000559497 298 ntBASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 AC024563.2-201ENST00000603282 481 ntBASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CUEDC1Q9NWM3 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CUEDC1Q9NWM3 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms