Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
COL12A1Q99715 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
COL12A1Q99715 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL12A1Q99715 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.79■□□□□ 0.12
COL12A1Q99715 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
COL12A1Q99715 AC007952.6-201ENST00000573168 2673 ntBASIC15.78■□□□□ 0.12
COL12A1Q99715 AC003957.1-201ENST00000625108 2673 ntBASIC15.78■□□□□ 0.12
COL12A1Q99715 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC15.78■□□□□ 0.12
COL12A1Q99715 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL12A1Q99715 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
COL12A1Q99715 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
COL12A1Q99715 GRAP-202ENST00000395635 834 ntTSL 2 BASIC15.78■□□□□ 0.12
COL12A1Q99715 CTNS-203ENST00000399306 803 ntTSL 3 BASIC15.78■□□□□ 0.12
COL12A1Q99715 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC15.78■□□□□ 0.12
COL12A1Q99715 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC15.78■□□□□ 0.12
COL12A1Q99715 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC15.78■□□□□ 0.12
COL12A1Q99715 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.78■□□□□ 0.12
COL12A1Q99715 NOP2-211ENST00000540228 668 ntTSL 2 BASIC15.78■□□□□ 0.12
COL12A1Q99715 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.78■□□□□ 0.12
COL12A1Q99715 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL12A1Q99715 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL12A1Q99715 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL12A1Q99715 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL12A1Q99715 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL12A1Q99715 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
COL12A1Q99715 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC15.78■□□□□ 0.12
COL12A1Q99715 AC068472.1-201ENST00000474589 881 ntBASIC15.78■□□□□ 0.12
COL12A1Q99715 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC15.78■□□□□ 0.12
COL12A1Q99715 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
COL12A1Q99715 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL12A1Q99715 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC15.78■□□□□ 0.12
COL12A1Q99715 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL12A1Q99715 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL12A1Q99715 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL12A1Q99715 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
COL12A1Q99715 AC055876.3-201ENST00000431496 288 ntBASIC15.77■□□□□ 0.12
COL12A1Q99715 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL12A1Q99715 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC15.77■□□□□ 0.12
COL12A1Q99715 AC138649.4-201ENST00000612222 287 ntBASIC15.77■□□□□ 0.12
COL12A1Q99715 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
COL12A1Q99715 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL12A1Q99715 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL12A1Q99715 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.77■□□□□ 0.12
COL12A1Q99715 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
COL12A1Q99715 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
COL12A1Q99715 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.77■□□□□ 0.11
COL12A1Q99715 AC004461.1-201ENST00000412461 403 ntBASIC15.77■□□□□ 0.11
COL12A1Q99715 PMS2P4-201ENST00000412466 1052 ntBASIC15.77■□□□□ 0.11
COL12A1Q99715 CRB3P1-201ENST00000449338 276 ntBASIC15.77■□□□□ 0.11
COL12A1Q99715 AC108073.2-201ENST00000464002 357 ntBASIC15.77■□□□□ 0.11
COL12A1Q99715 AC004449.1-201ENST00000564240 433 ntBASIC15.77■□□□□ 0.11
COL12A1Q99715 AL132655.2-201ENST00000596276 594 ntBASIC15.77■□□□□ 0.11
COL12A1Q99715 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
COL12A1Q99715 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC15.77■□□□□ 0.11
COL12A1Q99715 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
COL12A1Q99715 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
COL12A1Q99715 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.77■□□□□ 0.11
COL12A1Q99715 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC15.77■□□□□ 0.11
COL12A1Q99715 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC15.77■□□□□ 0.11
COL12A1Q99715 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
COL12A1Q99715 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC15.76■□□□□ 0.11
COL12A1Q99715 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
COL12A1Q99715 AC084346.2-201ENST00000607097 949 ntBASIC15.76■□□□□ 0.11
COL12A1Q99715 SNX12-206ENST00000622259 661 ntTSL 5 BASIC15.76■□□□□ 0.11
COL12A1Q99715 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC15.76■□□□□ 0.11
COL12A1Q99715 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
COL12A1Q99715 IRX1P1-201ENST00000438849 1838 ntBASIC15.76■□□□□ 0.11
COL12A1Q99715 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC15.76■□□□□ 0.11
COL12A1Q99715 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 TFAMP1-201ENST00000412727 736 ntBASIC15.76■□□□□ 0.11
COL12A1Q99715 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.76■□□□□ 0.11
COL12A1Q99715 AC051619.7-201ENST00000568314 623 ntBASIC15.76■□□□□ 0.11
COL12A1Q99715 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 AL163051.1-201ENST00000569214 1512 ntBASIC15.76■□□□□ 0.11
COL12A1Q99715 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC15.76■□□□□ 0.11
COL12A1Q99715 Z98044.1-201ENST00000632503 1764 ntBASIC15.76■□□□□ 0.11
COL12A1Q99715 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.76■□□□□ 0.11
COL12A1Q99715 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.76■□□□□ 0.11
COL12A1Q99715 AL596325.1-201ENST00000563991 1082 ntBASIC15.76■□□□□ 0.11
COL12A1Q99715 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.76■□□□□ 0.11
COL12A1Q99715 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.76■□□□□ 0.11
COL12A1Q99715 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC15.76■□□□□ 0.11
COL12A1Q99715 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC15.76■□□□□ 0.11
COL12A1Q99715 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL12A1Q99715 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms