Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CFAP54Q96N23 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.71■□□□□ 0.43
CFAP54Q96N23 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC17.71■□□□□ 0.43
CFAP54Q96N23 ATP5G2P4-201ENST00000442175 420 ntBASIC17.71■□□□□ 0.43
CFAP54Q96N23 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CFAP54Q96N23 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.71■□□□□ 0.43
CFAP54Q96N23 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.71■□□□□ 0.43
CFAP54Q96N23 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.71■□□□□ 0.43
CFAP54Q96N23 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.71■□□□□ 0.43
CFAP54Q96N23 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.71■□□□□ 0.43
CFAP54Q96N23 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CFAP54Q96N23 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CFAP54Q96N23 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CFAP54Q96N23 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CFAP54Q96N23 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CFAP54Q96N23 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CFAP54Q96N23 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 NKAPP1-205ENST00000585790 367 ntBASIC17.7■□□□□ 0.42
CFAP54Q96N23 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 AC004449.1-201ENST00000564240 433 ntBASIC17.7■□□□□ 0.42
CFAP54Q96N23 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.7■□□□□ 0.42
CFAP54Q96N23 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CFAP54Q96N23 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CFAP54Q96N23 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CFAP54Q96N23 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CFAP54Q96N23 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
CFAP54Q96N23 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CFAP54Q96N23 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CFAP54Q96N23 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CFAP54Q96N23 AC125634.1-201ENST00000438758 1403 ntBASIC17.69■□□□□ 0.42
CFAP54Q96N23 FAM207CP-201ENST00000443486 507 ntBASIC17.69■□□□□ 0.42
CFAP54Q96N23 DUX4L27-201ENST00000554796 1261 ntBASIC17.69■□□□□ 0.42
CFAP54Q96N23 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
CFAP54Q96N23 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
CFAP54Q96N23 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CFAP54Q96N23 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CFAP54Q96N23 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.69■□□□□ 0.42
CFAP54Q96N23 TCF3P1-201ENST00000423021 1937 ntBASIC17.69■□□□□ 0.42
CFAP54Q96N23 AL049812.1-201ENST00000432563 2267 ntBASIC17.69■□□□□ 0.42
CFAP54Q96N23 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CFAP54Q96N23 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC17.69■□□□□ 0.42
CFAP54Q96N23 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.69■□□□□ 0.42
CFAP54Q96N23 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC17.69■□□□□ 0.42
CFAP54Q96N23 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.69■□□□□ 0.42
CFAP54Q96N23 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CFAP54Q96N23 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
CFAP54Q96N23 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.68■□□□□ 0.42
CFAP54Q96N23 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CFAP54Q96N23 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.68■□□□□ 0.42
CFAP54Q96N23 AC136632.2-201ENST00000512891 861 ntBASIC17.68■□□□□ 0.42
CFAP54Q96N23 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.68■□□□□ 0.42
CFAP54Q96N23 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.68■□□□□ 0.42
CFAP54Q96N23 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.68■□□□□ 0.42
CFAP54Q96N23 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CFAP54Q96N23 AL512353.2-201ENST00000448759 1962 ntBASIC17.68■□□□□ 0.42
CFAP54Q96N23 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.68■□□□□ 0.42
CFAP54Q96N23 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.68■□□□□ 0.42
CFAP54Q96N23 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CFAP54Q96N23 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CFAP54Q96N23 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.68■□□□□ 0.42
CFAP54Q96N23 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.68■□□□□ 0.42
CFAP54Q96N23 AC022145.2-201ENST00000598203 171 ntBASIC17.68■□□□□ 0.42
CFAP54Q96N23 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CFAP54Q96N23 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.68■□□□□ 0.42
CFAP54Q96N23 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.68■□□□□ 0.42
CFAP54Q96N23 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CFAP54Q96N23 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CFAP54Q96N23 AC006333.2-201ENST00000607957 2099 ntBASIC17.68■□□□□ 0.42
CFAP54Q96N23 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms