Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SHROOM3Q8TF72 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.5■□□□□ 0.55
SHROOM3Q8TF72 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 AP000997.3-201ENST00000623333 2250 ntBASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 HOMER2P1-201ENST00000455653 964 ntBASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 AC134043.2-201ENST00000624206 2238 ntBASIC18.49■□□□□ 0.55
SHROOM3Q8TF72 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 AC246785.2-201ENST00000432512 513 ntBASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 GPALPP1-207ENST00000611650 899 ntBASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 AL031432.5-201ENST00000641059 760 ntBASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.48■□□□□ 0.55
SHROOM3Q8TF72 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms